Protein Alignment Polr2I and rpc-11

DIOPT Version :10

• Sequence 1: NP_731898.1
• Gene: Polr2I / 41741
• FlyBaseID: FBgn0004855
• Length: 129
• Species: Drosophila melanogaster
• Sequence 2: NP_500076.1
• Gene: rpc-11 / 176950
• WormBaseID: WBGene00022309
• Length: 108
• Species: Caenorhabditis elegans
• Alignment Length: 115
• Identity: 33/115 - (28%)
• Similarity: 50/115 - (43%)
• Gaps: 11/115 - (9%)

  Fly    18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVISDP-- 80
            :.||.||..:|  :.:...:.:.::|..|.|.      |.....:...|......:.||:..|
 Worm     2 LTFCPECGCVL--QIESGEQCMRFSCPACPYV------CPVTQTVTSRIYPKLKDIDDVLGGPGA 58

  Fly    81 -TLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
             ...:..|..||.|||..|.|.|.|||.|:|...::|.|.:..|.|||.:
 Worm    59 WANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2I	NP_731898.1	RPB9	19..129	CDD:441202	33/112 (29%)
		Zn-ribbon_RPB9	78..128	CDD:259793	20/52 (38%)
rpc-11	NP_500076.1	RPB9	4..106	CDD:441202	31/109 (28%)
		Zn-ribbon_RPC11	61..108	CDD:259794	20/46 (43%)