DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and znf438

DIOPT Version :9

Sequence 1:NP_001247098.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_001070629.1 Gene:znf438 / 798757 ZFINID:ZDB-GENE-060929-868 Length:746 Species:Danio rerio


Alignment Length:712 Identity:133/712 - (18%)
Similarity:230/712 - (32%) Gaps:196/712 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SKEGKEKKGKLLGVENISPPK----------------DKRPATRMKLLNDVGAGEDSEASTTTTT 52
            ||...||.|..:.    ||.|                ...|.:...:|.|..|..|...:.....
Zfish   116 SKSAPEKGGNKIQ----SPTKVSATTHAQSSILKTEQSSEPLSEQLVLPDTPASSDISIAPLLPA 176

  Fly    53 SRTPSNKQEKRGSVAGSRIK--------ILNEEILGTPKTEKRGATKSTAPAASTVKILNEKKTP 109
            |.. ..|.|::..|...|.:        :.:.:.:...||:    .:..|.|.|.:.:|    :|
Zfish   177 SHV-DQKVEQKSDVGPLRNQPYPSGTSLVASIKKISPVKTQ----IECPASAGSAITVL----SP 232

  Fly   110 SATVTAVETTKIKTSPSKRKKMEHYVLQAVKSENTKADTTVTVVTEEDD--TIDFILADDEEVVP 172
            :....||:   |..||.|.|..   :|...|.:|:....|....|...|  |:.:..:..:....
Zfish   233 TIFSKAVQ---IIPSPPKGKLP---ILPYAKVKNSLLAPTSLASTPFSDKQTVSWAKSSPKNPTE 291

  Fly   173 GRIENNNGQEIVVTED-DEDLGEDGDEDGEDSSGKGNSSQTKIKEIVEHVCGKCYKTFRRVQSL- 235
            .:::..|.:  |.||. .:||                 :.|:.|:......|:..||...:.:. 
Zfish   292 NKVKFINNK--VKTESLSQDL-----------------NNTQFKKPSGKKPGRKRKTMGDILAFE 337

  Fly   236 ---KKHLEFCR-----------YDSGYHLRKADMLKNLEKIE-KDAVVMEKKDICFCCSESYDTF 285
               |:.|.|.|           .:|....:..|:.|....|. |..:|||               
Zfish   338 ARKKRSLSFFRRRVPEKPPPGVQNSASQQKFLDISKKYRSIRPKPVLVME--------------- 387

  Fly   286 HLGHINCPDCPKSFKTQTSYERHIFITHSEFSDFPCS--ICNANLRSEALLALHEEQHKSRGKPY 348
                             .:..:.:.:.....||.|..  :....:..:.|.|....|...|....
Zfish   388 -----------------ATIPQLVPLPSMSASDNPDQDLLAGQQISGKTLSAPQSSQATDRQPVL 435

  Fly   349 ACKI-CGKDFTRSYHLKRHQKYSSCSSNETDTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPE 412
            .||: .|..:|.|..|.|                |..|:|.|....:|:||:..|...:     .
Zfish   436 NCKVNSGVIYTSSRLLHR----------------CPTCNRCFQFKHHLQSHMNSHSNLR-----P 479

  Fly   413 YMCHTCKNCFYSLSTLNIHIRTHTGE----KPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTV 473
            |:|..|:..:....:|:.|::.|..|    |...|:.|:|.|..:.....|.|          .|
Zfish   480 YVCPVCRKAYAHSGSLSTHMKLHHAESKPRKSLCCEFCEKSFGYVGVYFSHLR----------EV 534

  Fly   474 CNQAFAVKEVLNRHMKRHTGERPHKCDE---------------CGKSFIQA-TQLRTHSKTHIRP 522
            ......|:..:::|.:..:.|...:.||               ||:  .|| |......|.|:..
Zfish   535 HRVILTVEPSISQHEESISVEESSEIDEQASEQRVDPVELQIKCGR--CQAITPTFADMKLHLLY 597

  Fly   523 FPCEQCDEKFK---------TEKQLERHVKTHSR---TKRPVFSCAECKRNFRTPALLKEHMDEG 575
            ...|:...:.:         .|.:|.:|...:.|   .||.:..|..|...|.:.:..|.|:...
Zfish   598 VHGEEVQVRLRDGAMHGGREAEDELVKHAAHYWRQLNEKRNLVHCGTCNEEFFSFSKFKHHLHSN 662

  Fly   576 -KHSPKQQRS--------------SMRSAVKIMERTDCAICDKNFDSSDTLRRHIRTVHECD 622
             :.||:::..              |...::::....:|.:|.|.|:....:..|....|.|:
Zfish   663 HQESPEEEEEEEEKEEKMVIGKGLSKDISLRVGSHFNCILCSKVFNKKQEVIEHWSAQHNCE 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_001247098.1 C2H2 Zn finger 292..313 CDD:275368 0/20 (0%)
COG5048 <312..517 CDD:227381 47/227 (21%)
C2H2 Zn finger 321..341 CDD:275368 2/21 (10%)
zf-C2H2 348..368 CDD:278523 7/20 (35%)
C2H2 Zn finger 350..368 CDD:275368 7/18 (39%)
C2H2 Zn finger 382..402 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..435 CDD:275368 4/19 (21%)
zf-H2C2_2 428..451 CDD:290200 8/26 (31%)
C2H2 Zn finger 443..463 CDD:275368 6/19 (32%)
zf-H2C2_2 455..479 CDD:290200 3/23 (13%)
COG5048 <467..620 CDD:227381 33/195 (17%)
C2H2 Zn finger 471..491 CDD:275368 3/19 (16%)
zf-H2C2_2 484..508 CDD:290200 6/38 (16%)
C2H2 Zn finger 499..519 CDD:275368 8/35 (23%)
C2H2 Zn finger 525..545 CDD:275368 4/28 (14%)
C2H2 Zn finger 555..572 CDD:275368 4/16 (25%)
C2H2 Zn finger 598..615 CDD:275371 4/16 (25%)
znf438NP_001070629.1 zf-C2H2 452..474 CDD:278523 8/37 (22%)
C2H2 Zn finger 454..474 CDD:275368 7/19 (37%)
zf-H2C2_2 466..491 CDD:290200 7/29 (24%)
C2H2 Zn finger 482..502 CDD:275368 4/19 (21%)
C2H2 Zn finger 514..532 CDD:275368 5/17 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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