DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and CG4730

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_651413.1 Gene:CG4730 / 43099 FlyBaseID:FBgn0039355 Length:392 Species:Drosophila melanogaster


Alignment Length:314 Identity:80/314 - (25%)
Similarity:125/314 - (39%) Gaps:59/314 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 YDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSE----SYDTFHLGHINCPDCPKSFKTQTS 304
            ||......|.|:.:|.:.        |.:.:|..|:.    :|| ||          |.......
  Fly    75 YDCYEICTKEDLRQNPKN--------EPRTLCKRCAVELKWAYD-FH----------KKMAIANQ 120

  Fly   305 YERHIFI-----THSEFSDFPCSICNANLRSEALLALHEEQHKSRGKPYACKICGKDFT-RSYHL 363
            ..|.||:     |..| .|.......|::..|.|:   ||..:.:..|....   :|.. |:.| 
  Fly   121 QLREIFVATEANTEQE-DDVEDEENEADMNEEFLM---EEIEEKQETPIDSL---EDIVPRNRH- 177

  Fly   364 KRHQKYSSCSSNETDTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKNCFYSLSTL 428
                         |...:||.|.:.|.....:..|...||    ..:|.:.|..|...:.:...|
  Fly   178 -------------TGKSNCKFCHKEFRNHSRMAKHQMIHL----ANRPNFRCSQCDRVYLTKQAL 225

  Fly   429 NIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMK-RHT 492
            .:|:.:...:....||.|.|.|:...||:.|:|||..:.||||.:|::.||.:..|..|.: :|:
  Fly   226 KVHVDSKHRQSGVHCDTCGKVFAIAKALEIHKRYHNRDFPYSCDLCDRRFAQRSHLTVHQQVKHS 290

  Fly   493 GERPHKCD--ECGKSFIQATQLRTHSKTH-IRPFPCEQCDEKFKTEKQLERHVK 543
            |.| ..|:  .|.|||..::.||.|..|| ..||.|..|.:.:....:|..|::
  Fly   291 GSR-FICEFPGCQKSFTSSSSLRNHECTHTAMPFECAHCHQSYPARNKLRMHLE 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368 4/25 (16%)
COG5048 <312..517 CDD:227381 56/208 (27%)
C2H2 Zn finger 321..341 CDD:275368 5/19 (26%)
C2H2 Zn finger 350..368 CDD:275368 3/18 (17%)
C2H2 Zn finger 382..402 CDD:275368 5/19 (26%)
C2H2 Zn finger 415..435 CDD:275368 4/19 (21%)
C2H2 Zn finger 443..463 CDD:275368 9/19 (47%)
COG5048 <467..620 CDD:227381 28/81 (35%)
C2H2 Zn finger 471..491 CDD:275368 6/20 (30%)
C2H2 Zn finger 499..519 CDD:275368 8/21 (38%)
C2H2 Zn finger 525..545 CDD:275368 4/19 (21%)
C2H2 Zn finger 555..572 CDD:275368
C2H2 Zn finger 598..615 CDD:275371
CG4730NP_651413.1 zf-AD 46..124 CDD:462262 13/67 (19%)
C2H2 Zn finger 183..203 CDD:275368 5/19 (26%)
C2H2 Zn finger 212..232 CDD:275368 4/19 (21%)
C2H2 Zn finger 240..260 CDD:275368 9/19 (47%)
C2H2 Zn finger 268..289 CDD:275368 6/20 (30%)
C2H2 Zn finger 296..318 CDD:275368 8/21 (38%)
C2H2 Zn finger 325..346 CDD:275368 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.

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