DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and CG17359

DIOPT Version :9

Sequence 1:NP_001247098.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_648679.1 Gene:CG17359 / 39549 FlyBaseID:FBgn0036396 Length:339 Species:Drosophila melanogaster


Alignment Length:340 Identity:90/340 - (26%)
Similarity:128/340 - (37%) Gaps:109/340 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 CSICNANLRSEALLALHEEQ--------------------------HKSRGKP-YACKICGKDFT 358
            |.:|..  .|:.||.::.|.                          ||..|.| :.|..|.:...
  Fly     7 CRVCRD--ESDCLLDIYTEPYASSNRVQEQEPVLATMLRECSGCSVHKEDGMPQFICVECAEAVR 69

  Fly   359 RSYHLKR-----HQKYSSCSSNETDTMSCKVCDRVFYRLDNLRSHLKQHLGTQVV---KKPE--- 412
            .:|.|:|     ||.:      |...:..|..|.:.|.| |:..:::..:...|:   |.||   
  Fly    70 NAYRLRRQCRKSHQYF------EQLRLMMKELDDIEYCL-NIGDNIEPQMPVSVMEAGKTPETSE 127

  Fly   413 ----------YMCHTCKNCFYSLSTLNIH--------IRT-HTGEK------------------- 439
                      ||....|.....|...|.|        .:| |...|                   
  Fly   128 PLLVELVQVKYMPPEPKPISSPLPDNNEHKLAQSYSPAKTPHNKSKRRARSYSDNDSWSPDSELE 192

  Fly   440 ---------------------PFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEV 483
                                 |:.|.||.:.|:....|:.|.|.||||:||.|::|.::||.|..
  Fly   193 HEDDDKIWNASKRGKPKRVPGPYRCKLCTQSFTQKQNLEIHMRIHTGERPYKCSLCPRSFAQKGN 257

  Fly   484 LNRHMKRHTGERPHKCDECGKSFIQATQLRTHSKTHI--RPFPCEQCDEKFKTEKQLERHVKTHS 546
            |..|.:.||||||..|..|.|.|.|..||:.|::||.  :||.|.:|.:.||....|::|:..|:
  Fly   258 LQSHTRCHTGERPFGCPNCPKRFRQVGQLQVHTRTHTGEQPFKCSKCQQSFKQLNGLQKHMSAHT 322

  Fly   547 RTKRPVFSCAECKRN 561
            |.||.. |..|.|||
  Fly   323 RGKRRT-SSQETKRN 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_001247098.1 C2H2 Zn finger 292..313 CDD:275368
COG5048 <312..517 CDD:227381 71/292 (24%)
C2H2 Zn finger 321..341 CDD:275368 6/45 (13%)
zf-C2H2 348..368 CDD:278523 6/24 (25%)
C2H2 Zn finger 350..368 CDD:275368 6/22 (27%)
C2H2 Zn finger 382..402 CDD:275368 5/19 (26%)
C2H2 Zn finger 415..435 CDD:275368 5/28 (18%)
zf-H2C2_2 428..451 CDD:290200 9/71 (13%)
C2H2 Zn finger 443..463 CDD:275368 7/19 (37%)
zf-H2C2_2 455..479 CDD:290200 11/23 (48%)
COG5048 <467..620 CDD:227381 42/97 (43%)
C2H2 Zn finger 471..491 CDD:275368 7/19 (37%)
zf-H2C2_2 484..508 CDD:290200 12/23 (52%)
C2H2 Zn finger 499..519 CDD:275368 8/19 (42%)
C2H2 Zn finger 525..545 CDD:275368 6/19 (32%)
C2H2 Zn finger 555..572 CDD:275368 4/7 (57%)
C2H2 Zn finger 598..615 CDD:275371
CG17359NP_648679.1 zf-AD 6..88 CDD:285071 18/88 (20%)
zf-C2H2 215..237 CDD:278523 7/21 (33%)
C2H2 Zn finger 217..237 CDD:275368 7/19 (37%)
zf-H2C2_2 229..254 CDD:290200 12/24 (50%)
C2H2 Zn finger 245..265 CDD:275368 7/19 (37%)
zf-H2C2_2 257..282 CDD:290200 12/24 (50%)
C2H2 Zn finger 273..293 CDD:275368 8/19 (42%)
zf-H2C2_2 286..310 CDD:290200 9/23 (39%)
C2H2 Zn finger 301..321 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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