DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment su(Hw) and D19B

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_477297.1 Gene:D19B / 38717 FlyBaseID:FBgn0022699 Length:774 Species:Drosophila melanogaster


Alignment Length:730 Identity:150/730 - (20%)
Similarity:238/730 - (32%) Gaps:257/730 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 DTTVTVVT---EEDDTIDF---------ILADDEEVVP--------------------GRIENNN 179
            ||:..|..   ||:|.:.|         |:.::|:|..                    ||:..::
  Fly   100 DTSAAVADLPGEEEDNVHFDPLLNSKIEIIENEEDVFKMLESVEKEVEEVEMEMEQPFGRVSQDD 164

  Fly   180 GQEIVVTEDDEDLGED----GDED-------------GEDSSGKGNSSQTKIKEIVE-------- 219
            ..|   :.:|.||..|    .|:|             |..:.||..|:..:.:|..|        
  Fly   165 SFE---SGNDNDLDADFQISSDDDIPLAQRSRRGATRGSKAKGKPKSAAKRQEEESEESEETSSS 226

  Fly   220 -----------------------------HVCGKCYKTFRRVQSLKKH----LEF-CRYDSGYHL 250
                                         |:|.:.:|...|.:...||    |.| |..:|   .
  Fly   227 DDSDGNPKDKPKRKRIPATERDRHRLIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCTVES---C 288

  Fly   251 RKADMLKNLEKIEKDAVVMEKKDICFC----CSESYD-----TFHLGHINCPDCPKSFKTQTSYE 306
            ||.....|..::..:....|...:..|    |::|:.     :||:..::..|.|:         
  Fly   289 RKGFTTANGLRVHVEHAHTETSAMHPCTYEGCNKSFARPVLLSFHMKRVHKVDTPQ--------- 344

  Fly   307 RHIFITHSEFSDFPCSICNANLRSEALLALHEEQHKSRGKPYACKICGKDFTRSY----HLKRHQ 367
                      .||||:.|....|....|..|..:|.....|:||:||||.|..:.    ||.||.
  Fly   345 ----------RDFPCTECEKVFRCPTALKKHMYKHTGEELPFACEICGKRFPINSVLRDHLLRHA 399

  Fly   368 KYSS-----CSSNETDTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKNCFYSLST 427
            ...:     |...:|                 .|....:|:.|. .|:.:|.|..|.:..::...
  Fly   400 GIKNHVCPYCGVGKT-----------------TRQEWNKHILTH-TKEKKYECRQCDHASHNKQA 446

  Fly   428 LNIHIR-THTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRH 491
            |..|:: .|...|.|.|..|.|.|....|.|.|.|.|||||...|.:|.:.|..::.|.:|:|.|
  Fly   447 LANHVKVVHEKRKDFACQYCGKTFGKSHACKIHERSHTGEKCCECKICGKVFLFEKGLTKHLKTH 511

  Fly   492 -------------------TG-------------------------------------------- 493
                               :|                                            
  Fly   512 EKRDLPKTQGTNALMGDGASGSSTIAKPSPHLRGRVERVDIAQLAGTVANPIPSVNLPSWSPQVN 576

  Fly   494 ----ERPHKCDECGKSFIQATQLRTHSKT---HIRPFPCEQCDEKFKTEKQLERHVKTHSRTKRP 551
                |..|.|.:|||.|...:.::.|.|.   .::.|.|..|.::|..::.|..|...|:..|  
  Fly   577 FTKKEGQHICPDCGKGFNHVSNMKLHYKVVHQKVKDFCCRFCPKRFAKKQYLRHHEYIHTGEK-- 639

  Fly   552 VFSCAECKRNFRTPALLKEHM--------DEGK-HSPKQQRSSMRSAVKIMERTDCAICDKNFDS 607
            .:.|..|.::||...:||.||        ..|| ..|...::...:|||..:       .|||:.
  Fly   640 PYECKVCGKHFRQEQVLKTHMKVHDKPPRPPGKPKEPAGPKAESSTAVKRQQ-------PKNFEQ 697

  Fly   608 -SDTLRRHIRTVHECDPDDIFGVEPHPSKRAKKDIESEEVVPVAL----------NTSAGSLISS 661
             .|..........|.   ..:.:|.:.:|| |.:.|..::...|.          ||..| ..:.
  Fly   698 YQDPAAERAAATAEL---LAYQIEENEAKR-KAEAELRKIQEAAFEQLNKLQKQSNTYDG-FYAQ 757

  Fly   662 QTDGNGVVVREFLVD 676
            :.:..|..|....:|
  Fly   758 KAEAEGTSVDALKLD 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368 2/20 (10%)
COG5048 <312..517 CDD:227381 64/281 (23%)
C2H2 Zn finger 321..341 CDD:275368 5/19 (26%)
C2H2 Zn finger 350..368 CDD:275368 10/21 (48%)
C2H2 Zn finger 382..402 CDD:275368 1/19 (5%)
C2H2 Zn finger 415..435 CDD:275368 4/20 (20%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
COG5048 <467..620 CDD:227381 44/232 (19%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
C2H2 Zn finger 499..519 CDD:275368 7/22 (32%)
C2H2 Zn finger 525..545 CDD:275368 5/19 (26%)
C2H2 Zn finger 555..572 CDD:275368 6/16 (38%)
C2H2 Zn finger 598..615 CDD:275371 4/17 (24%)
D19BNP_477297.1 zf-AD 12..83 CDD:214871
C2H2 Zn finger 255..275 CDD:275368 5/19 (26%)
SFP1 <266..365 CDD:227516 25/120 (21%)
C2H2 Zn finger 283..335 CDD:275368 11/54 (20%)
C2H2 Zn finger 318..338 CDD:275368 4/19 (21%)
COG5048 <347..512 CDD:227381 53/182 (29%)
C2H2 Zn finger 349..369 CDD:275368 5/19 (26%)
C2H2 Zn finger 378..398 CDD:275368 8/19 (42%)
C2H2 Zn finger 406..426 CDD:275368 4/36 (11%)
C2H2 Zn finger 434..455 CDD:275368 4/20 (20%)
C2H2 Zn finger 463..483 CDD:275368 8/19 (42%)
C2H2 Zn finger 491..511 CDD:275368 6/19 (32%)
C2H2 Zn finger 586..607 CDD:275368 7/20 (35%)
C2H2 Zn finger 615..635 CDD:275368 5/19 (26%)
zf-H2C2_2 627..652 CDD:463886 7/26 (27%)
C2H2 Zn finger 643..663 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.