DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and Prdm14

DIOPT Version :9

Sequence 1:NP_001247098.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_001074678.2 Gene:Prdm14 / 383491 MGIID:3588194 Length:561 Species:Mus musculus


Alignment Length:282 Identity:81/282 - (28%)
Similarity:120/282 - (42%) Gaps:59/282 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 ESYDTFHLGH-------------INCPDCPKSFKTQTSYERHIFITHSEFSDFPCSICNANLRSE 331
            |.::..||.|             :||...||        |:::.....:...|..| |....|::
Mouse   294 EIFEDGHLSHFIDGKGSGNWMSYVNCARFPK--------EQNLLAVQHQGQIFYES-CRDIQRNQ 349

  Fly   332 ALLALH------------------------EEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSC 372
            .||..:                        .|..:...:.|.|:.|||.||..|:..:|.||:.|
Mouse   350 ELLVWYGNGYEKFLGVPMNLRVTEQGGQQLSESSEESAEGYRCERCGKVFTYKYYRDKHLKYTPC 414

  Fly   373 SSNETDTMSCKVCDRVFYRLDNLRSHL----KQHLGTQVVKKPEYMCHTCKNCFYSLSTLNIHIR 433
            .........|.:|.|.|.:.|.||.|:    ::|       :| |:|.||...|...|:||.|:|
Mouse   415 VDKGDRKFPCSLCQRSFEKRDRLRIHILHVHERH-------RP-YLCSTCGKSFSQSSSLNKHMR 471

  Fly   434 THTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKR-HTGERPH 497
            .|:|::|:.|..|.|||:|...|:.|.|.|:||||:.|..|.:|||.....:.|::| |......
Mouse   472 VHSGDRPYQCVYCTKKFTASSILRTHIRQHSGEKPFKCKHCGKAFASHAAHDSHVRRSHKDNGRS 536

  Fly   498 KCDECGKSFIQATQLRTHSKTH 519
            .||.|||.|:.......|.:.|
Mouse   537 SCDICGKGFLDQEAFYAHMRLH 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_001247098.1 C2H2 Zn finger 292..313 CDD:275368 4/20 (20%)
COG5048 <312..517 CDD:227381 71/233 (30%)
C2H2 Zn finger 321..341 CDD:275368 6/43 (14%)
zf-C2H2 348..368 CDD:278523 9/19 (47%)
C2H2 Zn finger 350..368 CDD:275368 8/17 (47%)
C2H2 Zn finger 382..402 CDD:275368 8/23 (35%)
C2H2 Zn finger 415..435 CDD:275368 9/19 (47%)
zf-H2C2_2 428..451 CDD:290200 11/22 (50%)
C2H2 Zn finger 443..463 CDD:275368 9/19 (47%)
zf-H2C2_2 455..479 CDD:290200 11/23 (48%)
COG5048 <467..620 CDD:227381 18/54 (33%)
C2H2 Zn finger 471..491 CDD:275368 7/20 (35%)
zf-H2C2_2 484..508 CDD:290200 9/24 (38%)
C2H2 Zn finger 499..519 CDD:275368 7/19 (37%)
C2H2 Zn finger 525..545 CDD:275368
C2H2 Zn finger 555..572 CDD:275368
C2H2 Zn finger 598..615 CDD:275371
Prdm14NP_001074678.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Interaction with CBFA2T2. /evidence=ECO:0000269|PubMed:26523391, ECO:0000269|PubMed:27281218 184..373 15/87 (17%)
SET 256..360 CDD:214614 15/74 (20%)
C2H2 Zn finger 392..410 CDD:275368 8/17 (47%)
C2H2 Zn finger 424..445 CDD:275368 8/20 (40%)
COG5048 449..>545 CDD:227381 41/96 (43%)
zf-C2H2 451..473 CDD:278523 10/21 (48%)
C2H2 Zn finger 453..473 CDD:275368 9/19 (47%)
zf-H2C2_2 465..489 CDD:290200 11/23 (48%)
C2H2 Zn finger 481..501 CDD:275368 9/19 (47%)
zf-H2C2_2 494..518 CDD:290200 12/23 (52%)
C2H2 Zn finger 509..527 CDD:275368 6/17 (35%)
C2H2 Zn finger 538..558 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4835
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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