DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and Kr

DIOPT Version :9

Sequence 1:NP_001247098.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_001261181.1 Gene:Kr / 38012 FlyBaseID:FBgn0001325 Length:502 Species:Drosophila melanogaster


Alignment Length:303 Identity:88/303 - (29%)
Similarity:121/303 - (39%) Gaps:77/303 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   407 VVKKP----EYMCHTCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEK 467
            |.|.|    .:.|..|...|.....|..|.|||||||||:|..|.|:|:....||.|.|.|||||
  Fly   212 VSKDPSRDKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECPECHKRFTRDHHLKTHMRLHTGEK 276

  Fly   468 PYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCDECGKSFIQATQLRTHSKTH--IRPFPCEQCDE 530
            ||.|:.|::.|.....|.||::.||||||:.|:.|...|..:.||::|...|  .:||.||:|..
  Fly   277 PYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDSNQLKSHMLVHNGEKPFECERCHM 341

  Fly   531 KFKTEKQLERH--------------------------VKTHSRTKRPVFSCAECKRNFRTPALLK 569
            ||:....|..|                          :...:.|.|....||       |.....
  Fly   342 KFRRRHHLMNHKCGIQSPPTPALSPAMSGDYPVAISAIAIEASTNRFAAMCA-------TYGGSN 399

  Fly   570 EHMDEGKHSPKQQRSSMRSAVKIMERTDCAICDKNFDSSDTLRRH-----------IRTVHECDP 623
            |.:|..|.:|:                |....|.:.|.:.::..|           ||.|....|
  Fly   400 ESVDMEKATPE----------------DDGPLDLSEDGASSVDGHCSNIARRKAQDIRRVFRLPP 448

  Fly   624 DDIFGVEPHPSKRAKKDIESEEVVPVALNT--SAGSLISSQTD 664
            ..|    ||......:..|.|:   :::::  |.||  ..|||
  Fly   449 PQI----PHVPSDMPEQTEPED---LSMHSPRSIGS--HEQTD 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_001247098.1 C2H2 Zn finger 292..313 CDD:275368
COG5048 <312..517 CDD:227381 50/113 (44%)
C2H2 Zn finger 321..341 CDD:275368
zf-C2H2 348..368 CDD:278523
C2H2 Zn finger 350..368 CDD:275368
C2H2 Zn finger 382..402 CDD:275368
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
zf-H2C2_2 428..451 CDD:290200 14/22 (64%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
zf-H2C2_2 455..479 CDD:290200 13/23 (57%)
COG5048 <467..620 CDD:227381 47/191 (25%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
zf-H2C2_2 484..508 CDD:290200 12/23 (52%)
C2H2 Zn finger 499..519 CDD:275368 6/19 (32%)
C2H2 Zn finger 525..545 CDD:275368 7/45 (16%)
C2H2 Zn finger 555..572 CDD:275368 4/16 (25%)
C2H2 Zn finger 598..615 CDD:275371 3/27 (11%)
KrNP_001261181.1 C2H2 Zn finger 224..244 CDD:275368 6/19 (32%)
zf-H2C2_2 237..261 CDD:290200 15/23 (65%)
C2H2 Zn finger 252..272 CDD:275368 8/19 (42%)
zf-H2C2_2 264..289 CDD:290200 14/24 (58%)
C2H2 Zn finger 280..300 CDD:275368 6/19 (32%)
zf-H2C2_2 292..316 CDD:290200 11/23 (48%)
C2H2 Zn finger 308..328 CDD:275368 6/19 (32%)
zf-H2C2_2 321..345 CDD:290200 10/23 (43%)
C2H2 Zn finger 336..352 CDD:275368 6/15 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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