DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and Kr-h1

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_477466.1 Gene:Kr-h1 / 33861 FlyBaseID:FBgn0266450 Length:845 Species:Drosophila melanogaster


Alignment Length:727 Identity:179/727 - (24%)
Similarity:263/727 - (36%) Gaps:229/727 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 TEKRGATKSTAPAASTVK---------ILNEKKTPSATVTAVETTKIKTSPSK---RKKMEHYVL 136
            ||.:..|||.||....:|         :|:..|:|:..|.      :|.||:|   ..||.:|  
  Fly     2 TESKNDTKSWAPKQIWIKDVLKKSGTELLDISKSPAKAVA------VKKSPAKDSATTKMVYY-- 58

  Fly   137 QAVKSENTKADTTVTVVTEEDDTIDFILADDEEVVPGRIENNNGQEIVVTEDDEDLGEDGDEDGE 201
                |.|     .:.:.||:.....|.|    :|.|         .:..|.....||.      .
  Fly    59 ----SAN-----QLLIKTEQSSQAQFCL----QVPP---------PLTATTTSVGLGV------P 95

  Fly   202 DSSGKGNSSQTKIKEIVEHVCGKCYKTFRRVQSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDA 266
            .|.|:           .||     ::..:..|..:..|:               |::..:.|:..
  Fly    96 PSGGQ-----------QEH-----FELLQTPQQRQMQLQ---------------LQDQHQQEQQQ 129

  Fly   267 VVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFSDFPCSICNANLRSE 331
            .|            ||......|          :.|...::|..||::..:..|.:   ..:::|
  Fly   130 FV------------SYQLAIQQH----------QKQQQQQQHESITNAAPTAAPSA---QRIKTE 169

  Fly   332 ------ALLALHEEQHK-SRGKP-YACKICGKDF----TRSYHLKRHQKYSSCSSN--------- 375
                  |..|:..:..| |..|| :.|..||..|    ..:.|.|.|.|....|.|         
  Fly   170 PVGGFPASAAVVSQVRKPSASKPQFKCDQCGMTFGSKSAHTSHTKSHSKNQDLSLNGASGAGVAA 234

  Fly   376 ETDTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKP-------------EYMCHTCKNCFYSLST 427
            ...|.:.::.|              ..|...:.|.|             .|.|:.|:..|...:.
  Fly   235 PVSTAAIELND--------------AGLPVGIPKSPTIKPLANVAAGADPYQCNVCQKTFAVPAR 285

  Fly   428 LNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHT 492
            |..|.||||||:||:|:.|.|.||....|:.|||.||.|:||.|.||.:||.....|:|||:.||
  Fly   286 LIRHYRTHTGERPFECEFCHKLFSVKENLQVHRRIHTKERPYKCDVCGRAFEHSGKLHRHMRIHT 350

  Fly   493 GERPHKCDECGKSFIQATQLRTHSKTHI--RPFPCEQ--CDEKFKTEKQLERHVKTHSRTKRPVF 553
            |||||||..|.|:|||:.||..|.:||.  :|:.|.:  |.:.|...|||:.|.:||:..|  .:
  Fly   351 GERPHKCSVCEKTFIQSGQLVIHMRTHTGEKPYKCPEPGCGKGFTCSKQLKVHSRTHTGEK--PY 413

  Fly   554 SCAECKRNFRTPALLKEHMDE--GKHSPKQQRSSMRSAVKIMERTDCAICDKNFDSSDTLRRHIR 616
            .|..|.|:|....:||.|..:  |....|                 |.|||:.|.:...:..||:
  Fly   414 HCDICFRDFGYNHVLKLHRVQHYGSKCYK-----------------CTICDETFKNKKEMEAHIK 461

  Fly   617 TVHECDPDDIFGVEPHPSKRAKKDIESE-EVVPVALNTSAGSLISSQTDGNGVVVREFLVDEGDG 680
            ......|||                |:| .....|.:|||||                  ..|..
  Fly   462 GHANEVPDD----------------EAEAAAASAAASTSAGS------------------SAGSP 492

  Fly   681 AAQTITLENETYTILPLDGAIEGEQLTDEAGVKPEAKKEEAQVSPVVKKEQRKSLAASLAAAIAD 745
            :.|.::..:|:....|             ....|..||......|.|.    |::||:|:...:.
  Fly   493 SLQGVSSNSESSNHSP-------------PSSPPATKKPRQARQPRVS----KTVAATLSIPTSS 540

  Fly   746 NLEESCSEDDFS 757
            .|..|.....:|
  Fly   541 PLSPSSLSSTYS 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368 3/20 (15%)
COG5048 <312..517 CDD:227381 78/238 (33%)
C2H2 Zn finger 321..341 CDD:275368 3/25 (12%)
C2H2 Zn finger 350..368 CDD:275368 7/21 (33%)
C2H2 Zn finger 382..402 CDD:275368 1/19 (5%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
C2H2 Zn finger 443..463 CDD:275368 9/19 (47%)
COG5048 <467..620 CDD:227381 57/158 (36%)
C2H2 Zn finger 471..491 CDD:275368 9/19 (47%)
C2H2 Zn finger 499..519 CDD:275368 9/19 (47%)
C2H2 Zn finger 525..545 CDD:275368 7/21 (33%)
C2H2 Zn finger 555..572 CDD:275368 6/16 (38%)
C2H2 Zn finger 598..615 CDD:275371 5/16 (31%)
Kr-h1NP_477466.1 C2H2 Zn finger 196..216 CDD:275368 6/19 (32%)
COG5048 <270..420 CDD:227381 69/151 (46%)
C2H2 Zn finger 273..293 CDD:275368 6/19 (32%)
C2H2 Zn finger 301..321 CDD:275368 9/19 (47%)
C2H2 Zn finger 329..349 CDD:275368 9/19 (47%)
C2H2 Zn finger 357..377 CDD:275368 9/19 (47%)
C2H2 Zn finger 385..407 CDD:275368 7/21 (33%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
zf-C2H2 441..463 CDD:395048 8/38 (21%)
C2H2 Zn finger 443..463 CDD:275368 7/19 (37%)

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