DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and CG3407

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_608809.1 Gene:CG3407 / 33606 FlyBaseID:FBgn0031573 Length:714 Species:Drosophila melanogaster


Alignment Length:245 Identity:75/245 - (30%)
Similarity:112/245 - (45%) Gaps:46/245 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 FPCSICNANLRSEALLALHEEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSSNETDTMSCK 383
            |...:.:.:|..||       ::|:|.|.: |..|.:|| .||:..::.:|   :.|:..:..|.
  Fly   474 FQMEVLDTSLTEEA-------ENKTRRKHF-CDKCNRDF-NSYNALKYHQY---THNQERSHKCD 526

  Fly   384 VCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKNCFYSLSTLNIH-IRTHTGEKPFDCDLCD 447
            .|:|.||....|::|.:.|.|.    || :.|..|:..|.....|..| |..|:..|...|:.|.
  Fly   527 SCERSFYTQSALKAHERTHSGV----KP-FKCDKCEFQFRQWGDLKYHIISRHSDVKAHMCEFCG 586

  Fly   448 KKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCDECGKSFIQATQL 512
            |.||...:|..|||.||.||.|:|..|::.|.....|..|:|.||||||::              
  Fly   587 KSFSRRYSLVVHRRIHTREKNYACQYCDKTFRASSYLLSHIKVHTGERPYE-------------- 637

  Fly   513 RTHSKTHIRPFPCEQCDEKFKTEKQLERHVKTH--SRTKRPVFSCAECKR 560
                        |..|::||:....|:||.:.|  |||.:|....|:.||
  Fly   638 ------------CSICEKKFRVSGDLKRHSRIHDPSRTSQPPAEKAKKKR 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368
COG5048 <312..517 CDD:227381 60/198 (30%)
C2H2 Zn finger 321..341 CDD:275368 3/19 (16%)
C2H2 Zn finger 350..368 CDD:275368 6/17 (35%)
C2H2 Zn finger 382..402 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..435 CDD:275368 6/20 (30%)
C2H2 Zn finger 443..463 CDD:275368 9/19 (47%)
COG5048 <467..620 CDD:227381 29/96 (30%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
C2H2 Zn finger 499..519 CDD:275368 0/19 (0%)
C2H2 Zn finger 525..545 CDD:275368 7/19 (37%)
C2H2 Zn finger 555..572 CDD:275368 3/6 (50%)
C2H2 Zn finger 598..615 CDD:275371
CG3407NP_608809.1 COG5048 <494..656 CDD:227381 61/197 (31%)
C2H2 Zn finger 497..517 CDD:275368 7/23 (30%)
C2H2 Zn finger 525..545 CDD:275368 7/19 (37%)
C2H2 Zn finger 555..574 CDD:275371 5/18 (28%)
C2H2 Zn finger 582..602 CDD:275368 9/19 (47%)
C2H2 Zn finger 610..630 CDD:275368 6/19 (32%)
C2H2 Zn finger 638..658 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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