DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment su(Hw) and CG2129

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_572449.1 Gene:CG2129 / 31741 FlyBaseID:FBgn0030008 Length:465 Species:Drosophila melanogaster


Alignment Length:462 Identity:106/462 - (22%)
Similarity:187/462 - (40%) Gaps:97/462 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 TKSTAPAASTVKILNEKKTPSATVTAVETTKIKTSPSKRKKMEHYVLQAVKSENTKADTTVTVVT 154
            |::|...|:..:..:.::.|::.|..|            .::..:....:..::.:......||.
  Fly    62 TEATDAGANLKQERDREREPNSPVPIV------------AQVNPFAWYEIGGDHNEDSDDERVVL 114

  Fly   155 EEDDTIDFILADDEEVVPGR---------------IENNNGQEIVVTEDDEDLGEDGDEDGEDSS 204
            |:.|       :||:..|||               :......::...|:|.:..|.|.|...||.
  Fly   115 EKQD-------EDEDERPGRSIIKWQDHQSLTSESLRQVRALKVDYKEEDSEQEECGMELDLDSE 172

  Fly   205 GKGNSSQTKIKEIVEHVCGKCYKTFRRVQSLKKHL----------EFCRYDSGYHLRKADMLKNL 259
            |:.::.       :.|.|..|.|.::..:.|::|:          :....|:.|           
  Fly   173 GRHSAK-------IPHSCPHCTKVYQSRKVLERHIMRQHKDTLSPDVDSEDADY----------- 219

  Fly   260 EKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFSD-----F 319
             :..|||.|..       .::.|        .|..|.|.:..:.|..:|:...|....:     |
  Fly   220 -EPPKDAPVKS-------AAQEY--------KCEHCGKIYHGKYSLRQHLKRDHDNGEEGGSAIF 268

  Fly   320 PCSICNANLRSEALLALHEEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSSNETDTMSC-- 382
            .|..|.|.|....||..|..|.....   ||.:||:.:...:.|||||...:...|    :.|  
  Fly   269 TCLECEAQLPRLRLLDEHMVQAHGGA---ACVVCGRRYKTRHELKRHQLKHTSERN----VPCPH 326

  Fly   383 KVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKNCFYSLSTLNIHIRTHTGEKPFDCDLCD 447
            ..|.:.|:.:.::|:|.|.|     .::..::|.:|.....:..||.:|||:||||:||.|.:||
  Fly   327 PGCGKRFFTIRHMRNHGKVH-----TEQKNFVCESCGYSCRNKETLRVHIRSHTGERPFGCQVCD 386

  Fly   448 KKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCDECGKSFIQATQL 512
            |:|.:...|::|...|:.|:|:.|:||...|:.::.|..|...|...:...|..||.::.||..|
  Fly   387 KRFPSHSGLREHMAMHSTERPHVCSVCGATFSRQKGLYHHKFLHADTKQFVCKLCGNAYAQAAGL 451

  Fly   513 RTHSKTH 519
            ..|.:.|
  Fly   452 AGHMRKH 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368 5/20 (25%)
COG5048 <312..517 CDD:227381 64/211 (30%)
C2H2 Zn finger 321..341 CDD:275368 7/19 (37%)
C2H2 Zn finger 350..368 CDD:275368 7/17 (41%)
C2H2 Zn finger 382..402 CDD:275368 6/21 (29%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 443..463 CDD:275368 7/19 (37%)
COG5048 <467..620 CDD:227381 16/53 (30%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
C2H2 Zn finger 499..519 CDD:275368 7/19 (37%)
C2H2 Zn finger 525..545 CDD:275368
C2H2 Zn finger 555..572 CDD:275368
C2H2 Zn finger 598..615 CDD:275371
CG2129NP_572449.1 SFP1 <180..258 CDD:227516 18/104 (17%)
C2H2 Zn finger 296..316 CDD:275370 8/19 (42%)
zf-C2H2_8 323..411 CDD:464935 30/92 (33%)
C2H2 Zn finger 327..346 CDD:275368 5/18 (28%)
C2H2 Zn finger 354..374 CDD:275368 7/19 (37%)
SFP1 <376..461 CDD:227516 29/83 (35%)
C2H2 Zn finger 382..402 CDD:275368 7/19 (37%)
C2H2 Zn finger 410..430 CDD:275368 6/19 (32%)
C2H2 Zn finger 438..458 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.