DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and CG2120

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_572446.2 Gene:CG2120 / 31737 FlyBaseID:FBgn0030005 Length:315 Species:Drosophila melanogaster


Alignment Length:246 Identity:73/246 - (29%)
Similarity:97/246 - (39%) Gaps:69/246 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 HQKYSSCSSNETDTM----------SCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKN 420
            |:....|....|.|.          :|.:|||.|....|||.|...|..    :|| ::|..|..
  Fly    75 HKPTDMCKPKRTPTTKRHRTTGKDHTCDICDRRFSEAYNLRIHKMTHTD----EKP-HVCVECGK 134

  Fly   421 CFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPY---------------- 469
            .|..|:.|.||..|||.|:|..||:|.|.|.....|..|||.|||||||                
  Fly   135 GFRQLNKLRIHAVTHTAERPHKCDICGKGFRYANYLTVHRRLHTGEKPYPCLATDCHLSFHSIHA 199

  Fly   470 ----------------------------------SCTVCNQAFAVKEVLNRHMKRHTGERPHKC- 499
                                              :|.||::....:..|:.|:|||..:|...| 
  Fly   200 RRIHTKLRHAAQTDPDPEHPLAEQEQRDTSALSFTCPVCSRVLTDQCYLSIHLKRHYNQRDFPCP 264

  Fly   500 -DECGKSFIQATQLRTHSKTHI--RPFPCEQCDEKFKTEKQLERHVKTHSR 547
             .||||.|..|::|:.|...|.  |||.|..|..:|..:...::|:|.|.|
  Fly   265 QPECGKRFFSASELKHHQIAHTQQRPFACPLCPARFLRKSNHKQHLKVHER 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368
COG5048 <312..517 CDD:227381 62/212 (29%)
C2H2 Zn finger 321..341 CDD:275368
C2H2 Zn finger 350..368 CDD:275368 1/1 (100%)
C2H2 Zn finger 382..402 CDD:275368 9/19 (47%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 443..463 CDD:275368 9/19 (47%)
COG5048 <467..620 CDD:227381 32/135 (24%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
C2H2 Zn finger 499..519 CDD:275368 9/21 (43%)
C2H2 Zn finger 525..545 CDD:275368 5/19 (26%)
C2H2 Zn finger 555..572 CDD:275368
C2H2 Zn finger 598..615 CDD:275371
CG2120NP_572446.2 C2H2 Zn finger 101..121 CDD:275368 9/19 (47%)
C2H2 Zn finger 129..149 CDD:275368 7/19 (37%)
COG5048 151..>264 CDD:227381 27/112 (24%)
C2H2 Zn finger 157..177 CDD:275368 9/19 (47%)
C2H2 Zn finger 185..206 CDD:275368 0/20 (0%)
C2H2 Zn finger 235..255 CDD:275368 6/19 (32%)
C2H2 Zn finger 263..285 CDD:275368 9/21 (43%)
C2H2 Zn finger 293..313 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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