DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and CG11398

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_569896.1 Gene:CG11398 / 31070 FlyBaseID:FBgn0040366 Length:329 Species:Drosophila melanogaster


Alignment Length:271 Identity:68/271 - (25%)
Similarity:101/271 - (37%) Gaps:49/271 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 FPCSICNANLRSEALLALHEEQHKSRG------KPYACKICGKDFTRSYHLKRHQKYSSCSSNET 377
            |.|..|.|...:...||.|...|:.:|      ..:||..||:.|.:...|..|..    :.|:.
  Fly    50 FVCRRCPALFLTREELAAHRPTHRYQGGQQTPASEHACDACGRVFQKHNALVDHMN----AHNDV 110

  Fly   378 DTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHT-----CKNCFYSLSTLNIHIRT-HT 436
            ....|..|...|.:..|...|||.      |.:..|: |:     ||..|......:.|::| |.
  Fly   111 RNYPCPECPARFVQRSNRECHLKN------VHRKVYL-HSCPEPGCKKRFQQRRECDQHVKTVHQ 168

  Fly   437 GEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCDE 501
            .|:...||.|..:||..|..:||...|...|.|.|.:|.:.|...|..:.|:..|:..:.:.|..
  Fly   169 NERNLVCDTCSARFSHPVNYRKHLASHGSAKSYGCPICGKLFGRPENRDVHLFVHSICKAYICSV 233

  Fly   502 CGKSFIQATQLRTH---SKTHIRPFPCEQCDEKFKTEKQLERHVKTHSRTKRPVFSCAECKRNFR 563
            ||..:::..||..|   |..|..|..                       .::|.||.|...:|..
  Fly   234 CGADYMRRNQLIRHGLASGHHNDPIV-----------------------RQKPQFSPALAAKNRS 275

  Fly   564 TPALLKEHMDE 574
            ..:.:.|..||
  Fly   276 QRSAIDESQDE 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368
COG5048 <312..517 CDD:227381 57/212 (27%)
C2H2 Zn finger 321..341 CDD:275368 6/19 (32%)
C2H2 Zn finger 350..368 CDD:275368 6/17 (35%)
C2H2 Zn finger 382..402 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..435 CDD:275368 6/25 (24%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
COG5048 <467..620 CDD:227381 25/111 (23%)
C2H2 Zn finger 471..491 CDD:275368 5/19 (26%)
C2H2 Zn finger 499..519 CDD:275368 7/22 (32%)
C2H2 Zn finger 525..545 CDD:275368 0/19 (0%)
C2H2 Zn finger 555..572 CDD:275368 3/16 (19%)
C2H2 Zn finger 598..615 CDD:275371
CG11398NP_569896.1 C2H2 Zn finger 52..72 CDD:275368 6/19 (32%)
C2H2 Zn finger 87..107 CDD:275368 6/23 (26%)
C2H2 Zn finger 115..136 CDD:275368 7/26 (27%)
C2H2 Zn finger 144..165 CDD:275368 4/20 (20%)
C2H2 Zn finger 175..195 CDD:275368 8/19 (42%)
C2H2 Zn finger 203..223 CDD:275368 5/19 (26%)
C2H2 Zn finger 231..247 CDD:275368 5/15 (33%)
Blue background indicates that the domain is not in the aligned region.

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