DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and CG11398

DIOPT Version :9

Sequence 1:NP_001247098.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_001259122.2 Gene:CG11398 / 31070 FlyBaseID:FBgn0040366 Length:329 Species:Drosophila melanogaster


Alignment Length:271 Identity:68/271 - (25%)
Similarity:101/271 - (37%) Gaps:49/271 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 FPCSICNANLRSEALLALHEEQHKSRG------KPYACKICGKDFTRSYHLKRHQKYSSCSSNET 377
            |.|..|.|...:...||.|...|:.:|      ..:||..||:.|.:...|..|..    :.|:.
  Fly    50 FVCRRCPALFLTREELAAHRPTHRYQGGQQTPASEHACDACGRVFQKHNALVDHMN----AHNDV 110

  Fly   378 DTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHT-----CKNCFYSLSTLNIHIRT-HT 436
            ....|..|...|.:..|...|||.      |.:..|: |:     ||..|......:.|::| |.
  Fly   111 RNYPCPECPARFVQRSNRECHLKN------VHRKVYL-HSCPEPGCKKRFQQRRECDQHVKTVHQ 168

  Fly   437 GEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCDE 501
            .|:...||.|..:||..|..:||...|...|.|.|.:|.:.|...|..:.|:..|:..:.:.|..
  Fly   169 NERNLVCDTCSARFSHPVNYRKHLASHGSAKSYGCPICGKLFGRPENRDVHLFVHSICKAYICSV 233

  Fly   502 CGKSFIQATQLRTH---SKTHIRPFPCEQCDEKFKTEKQLERHVKTHSRTKRPVFSCAECKRNFR 563
            ||..:::..||..|   |..|..|..                       .::|.||.|...:|..
  Fly   234 CGADYMRRNQLIRHGLASGHHNDPIV-----------------------RQKPQFSPALAAKNRS 275

  Fly   564 TPALLKEHMDE 574
            ..:.:.|..||
  Fly   276 QRSAIDESQDE 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_001247098.1 C2H2 Zn finger 292..313 CDD:275368
COG5048 <312..517 CDD:227381 57/212 (27%)
C2H2 Zn finger 321..341 CDD:275368 6/19 (32%)
zf-C2H2 348..368 CDD:278523 7/19 (37%)
C2H2 Zn finger 350..368 CDD:275368 6/17 (35%)
C2H2 Zn finger 382..402 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..435 CDD:275368 6/25 (24%)
zf-H2C2_2 428..451 CDD:290200 7/23 (30%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
zf-H2C2_2 455..479 CDD:290200 7/23 (30%)
COG5048 <467..620 CDD:227381 25/111 (23%)
C2H2 Zn finger 471..491 CDD:275368 5/19 (26%)
zf-H2C2_2 484..508 CDD:290200 5/23 (22%)
C2H2 Zn finger 499..519 CDD:275368 7/22 (32%)
C2H2 Zn finger 525..545 CDD:275368 0/19 (0%)
C2H2 Zn finger 555..572 CDD:275368 3/16 (19%)
C2H2 Zn finger 598..615 CDD:275371
CG11398NP_001259122.2 C2H2 Zn finger 52..72 CDD:275368 6/19 (32%)
C2H2 Zn finger 87..107 CDD:275368 6/23 (26%)
C2H2 Zn finger 115..136 CDD:275368 7/26 (27%)
C2H2 Zn finger 144..165 CDD:275368 4/20 (20%)
C2H2 Zn finger 175..195 CDD:275368 8/19 (42%)
C2H2 Zn finger 203..223 CDD:275368 5/19 (26%)
C2H2 Zn finger 231..247 CDD:275368 5/15 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446705
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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