DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and Zfp212

DIOPT Version :9

Sequence 1:NP_001247098.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:XP_006236507.1 Gene:Zfp212 / 297066 RGDID:1307836 Length:492 Species:Rattus norvegicus


Alignment Length:553 Identity:117/553 - (21%)
Similarity:177/553 - (32%) Gaps:167/553 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 TPSNKQEKRGSVAGSRIKILNEEILGTPKTEKRGATKSTAPAASTVKILNEKKTPSATVTAVETT 119
            ||:..:.||.|               ||      ...:|.|:.:|     ||.....|......|
  Rat     5 TPARHRRKRRS---------------TP------LAPATPPSQTT-----EKSQYFQTTEISLWT 43

  Fly   120 KIKTSPSKRKKMEHYVLQAVKSENTKADTTVTVVTEEDDTIDF------------ILADDEEVVP 172
            .:....:..||||....:....|.........:...|...::|            .|..:..::.
  Rat    44 VVAAIQAVEKKMESQAARLQSLEGRAGSAEKKLADFEKTAVEFSNQLEGKWAVLGTLLQEYGLLQ 108

  Fly   173 GRIEN------------------NNGQEIVVTEDDEDLG----EDGDEDGEDSSGKGNSSQTKIK 215
            .|:||                  :.|:...|:...|:.|    |...|:.||..          |
  Rat   109 RRLENVENLLRNKNFWVLRLPPGSKGETPKVSGPLENDGVCFSEQEWENLEDWQ----------K 163

  Fly   216 EIVEHVCGKCYKTFRRVQSLKKHLEFCR---------YDSGYHLRKADMLKN--LEKIEKDAVV- 268
            |:..:|....|:|...::.|.:..|...         .:.|.||....|:|.  |.|.|..:.: 
  Rat   164 ELYRNVMESNYETLVSLKVLGQPEEEVELGAEMVGDLVEEGTHLADRAMVKQEMLYKQEGPSGLP 228

  Fly   269 -----MEKKDICFCCSESY------DTFHL----GHIN----------CP----DCPKSFKTQTS 304
                 ..:...||...::.      |:..|    |..|          .|    |||:..|:   
  Rat   229 SMFSSAAEPQACFGSEQAVFWNSPGDSALLESGPGDSNPESVESSRDPAPGRNLDCPRKQKS--- 290

  Fly   305 YERHIFI---------THSEFSDFPCSICNANLRSEALLALHEEQHKSRGKPYACKICGKDFTRS 360
             .|.:.:         ...:.|.:.||.|..:.|.:..|..|.:.|.||                
  Rat   291 -HRQVQLGQECGQGPKVKRDTSPYKCSECQISFRYKQQLTAHLQSHTSR---------------- 338

  Fly   361 YHLKRHQKYSSCSSNETDTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKNCFYSL 425
                  :.||:....|                 :||.  :..|..|..:...:.|..|...|...
  Rat   339 ------ESYSATEPEE-----------------SLRP--RPRLKPQAKRSKLHQCDVCHRSFSCK 378

  Fly   426 STLNIHIRTHTGEKPFDCDLCDKKFS--ALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHM 488
            .:|..|.|.|..|.|.......::||  :||||..|..:........|..|.::|:....|.||.
  Rat   379 VSLVTHQRCHQQEGPSTSPQIQERFSPNSLVALPGHIPWRKSRSSLICGYCGKSFSHPSDLVRHQ 443

  Fly   489 KRHTGERPHKCDECGKSFIQATQLRTHSKTHIR 521
            :.||||||:.|.||.|||:|...|..|.|.|.|
  Rat   444 RIHTGERPYSCPECEKSFVQKQHLLQHQKIHQR 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_001247098.1 C2H2 Zn finger 292..313 CDD:275368 6/33 (18%)
COG5048 <312..517 CDD:227381 54/206 (26%)
C2H2 Zn finger 321..341 CDD:275368 6/19 (32%)
zf-C2H2 348..368 CDD:278523 0/19 (0%)
C2H2 Zn finger 350..368 CDD:275368 0/17 (0%)
C2H2 Zn finger 382..402 CDD:275368 2/19 (11%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
zf-H2C2_2 428..451 CDD:290200 6/22 (27%)
C2H2 Zn finger 443..463 CDD:275368 7/21 (33%)
zf-H2C2_2 455..479 CDD:290200 5/23 (22%)
COG5048 <467..620 CDD:227381 24/55 (44%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
zf-H2C2_2 484..508 CDD:290200 15/23 (65%)
C2H2 Zn finger 499..519 CDD:275368 10/19 (53%)
C2H2 Zn finger 525..545 CDD:275368
C2H2 Zn finger 555..572 CDD:275368
C2H2 Zn finger 598..615 CDD:275371
Zfp212XP_006236507.1 KRAB_A-box 142..180 CDD:143639 11/47 (23%)
zf-C2H2 313..335 CDD:278523 6/21 (29%)
C2H2 Zn finger 315..335 CDD:275368 6/19 (32%)
COG5048 <329..>474 CDD:227381 49/185 (26%)
C2H2 Zn finger 368..388 CDD:275368 6/19 (32%)
C2H2 Zn finger 426..446 CDD:275368 6/19 (32%)
zf-C2H2 426..446 CDD:278523 6/19 (32%)
zf-H2C2_2 438..463 CDD:290200 15/24 (63%)
C2H2 Zn finger 454..474 CDD:275368 10/19 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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