DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and ztf-16

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_001024851.1 Gene:ztf-16 / 180756 WormBaseID:WBGene00019960 Length:480 Species:Caenorhabditis elegans


Alignment Length:311 Identity:76/311 - (24%)
Similarity:137/311 - (44%) Gaps:69/311 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   349 ACKICGKDFTRSY------HLKRHQ-KYSSCSSNE-TDTMSCKVCDRVFYRLDNLRS-------- 397
            ||..||  ||.:.      |:::|: ::|..||.| :::.:.:..|.:.....:.||        
 Worm     6 ACTECG--FTTTVFSEFQGHIEKHENEHSRSSSGEMSNSQTIEWGDGIQSSTPSPRSTPPSDPTP 68

  Fly   398 ------HLKQHL------GTQVVKKP----EYMCHTCKNCFYSLSTLNIHIRTHTGEKPFDCDLC 446
                  ||:.|:      .|.:.|:|    :...|.|.:|.:: :.::.|:::|           
 Worm    69 SPDSDEHLEHHISITEITNTLIKKEPGTKGQKTVHVCPHCNFT-TCMSQHMKSH----------- 121

  Fly   447 DKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCDECGKSFIQATQ 511
                     |:.|.| |.|:. |.|.:|...|:.|..::||..||:|.:|::|..|.|.|.:..|
 Worm   122 ---------LEAHER-HQGQM-YQCDICKMQFSQKANMHRHRMRHSGVKPYECRFCKKRFFRKDQ 175

  Fly   512 LRTHSKTHIRP---FPC--EQCDEKFKTEKQLERHV-KTHSRTKRPVFSCAECKRNFRTPALLKE 570
            ::.||.|||:.   |.|  .||:.:|.....|..|: :||:.:.....||..|...|.....|..
 Worm   176 MQEHSMTHIKTGFGFDCPVSQCNMQFSQHNALRAHLEETHTISSTNPASCKRCNLMFANSRRLLL 240

  Fly   571 HM----DEGKHSPKQQRSSMRSAVKIMERTDCAICDKNFDSSDTLRRHIRT 617
            |.    |:.:.|||::.:..|.  |:.......:...|...::.|:|.:::
 Worm   241 HFQTRHDDSESSPKKENTPKRK--KLSNGNALPMDPANMSITEQLQRMVKS 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368
COG5048 <312..517 CDD:227381 48/199 (24%)
C2H2 Zn finger 321..341 CDD:275368
C2H2 Zn finger 350..368 CDD:275368 7/24 (29%)
C2H2 Zn finger 382..402 CDD:275368 5/33 (15%)
C2H2 Zn finger 415..435 CDD:275368 4/19 (21%)
C2H2 Zn finger 443..463 CDD:275368 3/19 (16%)
COG5048 <467..620 CDD:227381 45/161 (28%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
C2H2 Zn finger 499..519 CDD:275368 7/19 (37%)
C2H2 Zn finger 525..545 CDD:275368 6/22 (27%)
C2H2 Zn finger 555..572 CDD:275368 4/16 (25%)
C2H2 Zn finger 598..615 CDD:275371 3/16 (19%)
ztf-16NP_001024851.1 C2H2 Zn finger 105..125 CDD:275368 5/40 (13%)
C2H2 Zn finger 135..155 CDD:275368 6/19 (32%)
C2H2 Zn finger 163..183 CDD:275368 7/19 (37%)
C2H2 Zn finger 225..246 CDD:275368 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.

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