DRSC/TRiP Functional Genomics Resources

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Protein Alignment trx and SET1

DIOPT Version :10

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_011987.1 Gene:SET1 / 856519 SGDID:S000001161 Length:1080 Species:Saccharomyces cerevisiae


Alignment Length:1188 Identity:244/1188 - (20%)
Similarity:411/1188 - (34%) Gaps:379/1188 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  2700 VQNTVMSSQQFVSTAMPGMLSQNASFSATTTQVFQASKIEPIVDLPAGYVVLNNTGDASS----- 2759
            |.||:.||...:.|....:|.|..                     |:  |:..||.:..|     
Yeast   111 VHNTLASSSGSLPTESALLLQQRP---------------------PS--VLRYNTDNLKSKFHYF 152

  Fly  2760 ---AGTFLNAASVLQQQTQDDTTTQI-------LQNANFQFQSVPTSSGASTSMDYTSPVMVTAK 2814
               .|.|.|...:|..:..|...::.       ||:..|:|                        
Yeast   153 DPIKGEFFNKDKMLSWKATDKEFSETGYYVVKELQDGQFKF------------------------ 193

  Fly  2815 IPPVTQIKRTNAQAKAA------GISGVGKV-------------------------PPQPQVVNK 2848
                 :||..:.:.||:      ||...|||                         ||..::|..
Yeast   194 -----KIKHRHPEIKASDPRNENGIMTSGKVATHRKCRNSLILLPRISYDRYSLGPPPSCEIVVY 253

  Fly  2849 VLPTSIVTQQSQVQVKNSNLKQSQVKG------------------KAASGTGTTCGAPPSIASKP 2895
            ....|..|....:.:||...|..::..                  |.||..|....|..:..|..
Yeast   254 PAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAV 318

  Fly  2896 ------------------LQKKTNMIRPIHK-LEVKPKVMKPTPKVQNQNHSLLQQQQQQQPQLQ 2941
                              |.|.:.:...|.| :|:..|.::   |:|.......:::.:.:...:
Yeast   319 RKHESSGCFIMGFKFEVILNKHSILNNIISKFVEINVKKLQ---KLQENLKKAKEKEAENEKAKE 380

  Fly  2942 QQIPAVVVNQVPKV-TISQQRIPAQTQQQQLQQAQMIHIPQQQQPLQQQQVQVQPSMPIITLAEA 3005
            .|...:.:.:.||| |:|                   |....::.:....:.|..:.|::.:::.
Yeast   381 LQGKDITLPKEPKVDTLS-------------------HSSGSEKRIPYDLLGVVNNRPVLHVSKI 426

  Fly  3006 PVVQSQFVME-----------------PQALEQQELANRVQHFSTSSSSSSSNCSLPTN------ 3047
            .|.:.:|.:|                 |..:  ..:.|.:.|..|.|::.|.|.::.:.      
Yeast   427 FVAKHRFCVEDFKYKLRGYRCAKFIDHPTGI--YIIFNDIAHAQTCSNAESGNLTIMSRSRRIPI 489

  Fly  3048 ------VVNPMQQQAPSTTSSSTTRPTNRVLPMQQRQEPAPLSNECPVVSSPTP------PKPVE 3100
                  ::...|.:.....|||::..||..:..:.::|         .:.:...      .|.:.
Yeast   490 LIKFHLILPRFQNRTRFNKSSSSSNSTNVPIKYESKEE---------FIEATAKQILKDLEKTLH 545

  Fly  3101 QPIIHQMTSASVSKCYAQKSTLPSPVYEAELKVSSVLESIVPDVTMDAILEEQPVTESIYTEGLY 3165
            ..|..::...:|... ...:..|..:.:.|||.....:.|...:..|.:..::.........|||
Yeast   546 VDIKKRLIGPTVFDA-LDHANFPELLAKRELKEKEKRQQIASKIAEDELKRKEEAKRDFDLFGLY 609

  Fly  3166 ----EKNSPGESKTEQLLLQQQ--QREQLNQQLVNNGYLLDKHTFQVEPMDTDVYREEDL---EE 3221
                :.|.....:...|.|...  :|::|:..:....:||::.|   :..:|....:|.:   .:
Yeast   610 GGYAKSNKRNLKRHNSLALDHTSLKRKKLSNGIKPMAHLLNEET---DSKETTPLNDEGITRVSK 671

  Fly  3222 EEDEDDDFSLKMATSACNDHEMSDSEEPAVKDKISKILDNLTNDDCADSIATATTMEVDASAGYQ 3286
            |.||:|:   .|.:|:      |:.||....||..|            |.:..||.|.|...|.:
Yeast   672 EHDEEDE---NMTSSS------SEEEEEEAPDKKFK------------SESEPTTPESDHLHGIK 715

  Fly  3287 QMVEDVLATTAAQSAPTEEFEGALETAAVEAAATYINE-MADAHVLDLKQLQNGVELELR---RR 3347
            .:|.|       |:..::..:.   ::..:..||.|.| :......|||..|....::|:   :.
Yeast   716 PLVPD-------QNGSSDVLDA---SSMYKPTATEIPEPVYPPEEYDLKYSQTLSSMDLQNAIKD 770

  Fly  3348 KEEQRTVSQEQEQSKAAIVP-TAAAPE-----PPQPIQEPKKMTGPHL-----LYEIQSEDGFTY 3401
            :|:...:.|........:.| |:||.|     ..:.:.|.:|.:...:     |::.:.:.|.::
Yeast   771 EEDMLILKQLLSTYTPTVTPETSAALEYKIWQSRRKVLEEEKASDWQIELNGTLFDSELQPGSSF 835

  Fly  3402 KSSSITEIWEKVFEAVQVARRAHGLTPLPEGPLADMGGIQMIGLKTNALKYLIEQLPGVEKCSKY 3466
            |:....:|.:|                                ||.|                 |
Yeast   836 KAEGFRKIADK--------------------------------LKIN-----------------Y 851

  Fly  3467 TPKYHKRNGNVSTAANGAHGGNLGGSSASAALSVSGGDSHGLLDYGSDQDELEENAYDCARC--E 3529
            .|  |:|..:........|.                                |.|.|....|  |
Yeast   852 LP--HRRRVHQPLNTVNIHN--------------------------------ERNEYTPELCQRE 882

  Fly  3530 PYSNRSEYDMFSWLASRHRKQPIQVFVQPSDNELVPRR------------GTGSNLPMAMKYRTL 3582
            ..||:...|......|..|           ||....||            ||.|.|   :....|
Yeast   883 ESSNKEPSDSVPQEVSSSR-----------DNRASNRRFQQDIEAQKAAIGTESEL---LSLNQL 933

  Fly  3583 KETYKDYVGVFRSHIHGRGLYCTKDIEAGEMVIEYAGELIRSTLTDKRERYYDSRGIG-CYMFKI 3646
            .:..|. |...||.||..|||....|.|.||:|||.||.||..:.:.||:.|...||| .|:|::
Yeast   934 NKRKKP-VMFARSAIHNWGLYALDSIAAKEMIIEYVGERIRQPVAEMREKRYLKNGIGSSYLFRV 997

  Fly  3647 DDNLVVDATMRGNAARFINHCCEPNCYSKVVDILGHKHIIIFALRRIVQGEELTYDYKFPFE--- 3708
            |:|.|:|||.:|..||||||||:|||.:|::.:.|.:.|:|:|||.|...|||||||||..|   
Yeast   998 DENTVIDATKKGGIARFINHCCDPNCTAKIIKVGGRRRIVIYALRDIAASEELTYDYKFEREKDD 1062

  Fly  3709 DEKIPCSCGSKRCRKYLN 3726
            :|::||.||:..|:.:||
Yeast  1063 EERLPCLCGAPNCKGFLN 1080

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:413390
PRK13914 <1006..>1224 CDD:237555
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1890..1937 CDD:461787
FYRC 3388..3476 CDD:197781 12/92 (13%)
SET_KMT2A_2B 3575..3726 CDD:380947 71/154 (46%)
SET1NP_011987.1 AF-4 <11..>136 CDD:461550 8/45 (18%)
RRM_scSet1p_like 246..360 CDD:409743 19/116 (16%)
SET_assoc 422..486 CDD:432058 10/65 (15%)
N-SET 763..932 CDD:463344 41/265 (15%)
SET_SET1 926..1076 CDD:380998 71/153 (46%)
Blue background indicates that the domain is not in the aligned region.

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