DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trx and SDG16

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_194520.3 Gene:SDG16 / 828904 AraportID:AT4G27910 Length:1027 Species:Arabidopsis thaliana


Alignment Length:1149 Identity:230/1149 - (20%)
Similarity:389/1149 - (33%) Gaps:367/1149 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  2814 KIPPVTQIKRTNAQAK---AAGISGVGKVPP---QPQVVNKVLP--------TSIVTQQSQ-VQV 2863
            :||.:.:.|..|...|   ...:.|.|...|   ..::...::|        .|..|:.:: |:|
plant    10 QIPSLERCKLGNESRKKKRKLNLGGGGYYYPLNLLGEIAAGIVPGNGRNGFSASWCTEVTKPVEV 74

  Fly  2864 KNSNLKQSQVKGKAASGTGTTCGAPPSIASKPLQKKTNMIRPIHKLEVKPKVMKPTPKVQNQNHS 2928
            :.|       ..|..|.:||...:||:..|:|...:|:..|    ::|.|         ...|.|
plant    75 EES-------LSKRRSDSGTVRDSPPAEVSRPPLVRTSRGR----IQVLP---------SRFNDS 119

  Fly  2929 LLQQQQQ--------QQPQLQQQIPAVVVNQVPKVT-ISQQRIPAQTQQQQLQQAQMIHIPQQQQ 2984
            :|...::        ::.:::.:...||..:|||.| :..:.:..:::...|.:.:..|    :|
plant   120 VLDNWRKDSKSDCDLEEEEIECRNEKVVSFRVPKATNLKSKELDRKSKYSALCKEERFH----EQ 180

  Fly  2985 PLQQQQVQVQPSMPIITLAEAPVVQSQFVMEPQALEQQELANRVQHFSTSSSSSSSNCSLPTNVV 3049
            ...:.:.:|...:|          ..:....|:.....:|        ..:.|..:....|..|:
plant   181 HNDEARARVDEKLP----------NKKGTFGPENFYSGDL--------VWAKSGRNEPFWPAIVI 227

  Fly  3050 NPMQQQAPSTTSSS-------------TTRPTNRVLPMQQRQEPAPLSNECPVVSSPTPPKPVEQ 3101
            :|| .|||.....|             :.....|.....:|....|..:..        .:..||
plant   228 DPM-TQAPELVLRSCIPDAACVVFFGHSGNENERDYAWVRRGMIFPFVDYV--------ARFQEQ 283

  Fly  3102 PIIHQMTSASVSKCYAQKSTLPSPVYEAELKVSSVLESIVPDVTM----------------DAIL 3150
            |        .:..|  :.......:.||.|......|.::.|:.:                :..:
plant   284 P--------ELQGC--KPGNFQMALEEAFLADQGFTEKLMHDIHLAAGNSTFDDSFYRWIQETAV 338

  Fly  3151 EEQPVTESIYTEGLYEKNS------------------------PGESKTEQLLLQQQQR------ 3185
            ..|.:..:...:||.:|:.                        ||    :|||.:...|      
plant   339 SNQELNNNAPRQGLLKKHRNPLACAGCETVISFEMAKKMKDLIPG----DQLLCKPCSRLTKSKH 399

  Fly  3186 -----EQLNQQLVNNGY----------------LLDKHTFQVEPMDTDVY----REE---DLEEE 3222
                 :::...|.|..:                :.|:|...:.  :||.|    |.:   ||.:.
plant   400 ICGICKKIRNHLDNKSWVRCDGCKVRIHAECDQISDRHLKDLR--ETDYYCPTCRAKFNFDLSDS 462

  Fly  3223 EDEDDDFSL-----------------------------------------KMATSACNDHEMSDS 3246
            |.::....:                                         |.|.|....|..|.|
plant   463 EKQNSKSKVAKGDGQMVLPDKVIVVCAGVEGVYFPRLHLVVCKCGSCGPKKKALSEWERHTGSKS 527

  Fly  3247 E--EPAVKDKISKIL--DNLTNDDCADSIATATTMEVDASAGYQQMVEDVLATTAAQSAPTEEFE 3307
            :  :.:||.|.||:.  |.:.|  .|:..|.||..:|......:|..:.:||..:....|.    
plant   528 KNWKTSVKVKSSKLALEDWMMN--LAELHANATAAKVPKRPSIKQRKQRLLAFLSETYEPV---- 586

  Fly  3308 GALETAAVEAAATYINEMADAHVLDLKQLQNGVELELRRRKEEQRTVSQEQEQSKAAIVPTAAAP 3372
            .|..|....|...::.:.....::...:.|..|..|....:..:...|.           ...|.
plant   587 NAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARHVRDFTSW-----------VCKAC 640

  Fly  3373 EPPQPIQE----PKKMTGPHLLYEIQSEDGFTYKSSSITEIW----------EKVFEAVQVARRA 3423
            |.|...:|    |.|              |...|.:.:..:|          |..|.:.:....|
plant   641 ERPDIKRECCLCPVK--------------GGALKPTDVETLWVHVTCAWFQPEVCFASEEKMEPA 691

  Fly  3424 HGLTPLPEGPLADMGGIQMIGLKTNALKYLI--EQLPG-VEKCSKYTPKYH-------------- 3471
            .|:..:|               .||.:|..:  :|:.| ..:|.|.:..||              
plant   692 VGILSIP---------------STNFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELH 741

  Fly  3472 --KRNGN-----VSTAA--NGAHGGNL-------GGSSASAALSVSGGDSHGLLDYGSDQDEL-E 3519
              ::||.     ||..|  ...:..|:       |..||.:.:.........|:....:.||. .
plant   742 CLEKNGQQITKMVSYCAYHRAPNPDNVLIIQTPSGAFSAKSLVQNKKKGGSRLISLIREDDEAPA 806

  Fly  3520 ENAYDC-----ARCEPYSNRSEYDMFSWLASRHRKQPIQVFVQPSDNELVPRRGTGSNLPMAMKY 3579
            ||...|     |||..:..:        :.|:.|          .:.|.:|....|.....:...
plant   807 ENTITCDPFSAARCRVFKRK--------INSKKR----------IEEEAIPHHTRGPRHHASAAI 853

  Fly  3580 RT-----------------------LKETYKDYVGVFRSHIHGRGLYCTKDIEAGEMVIEYAGEL 3621
            :|                       |:.|..|.|...||.|||.||:..::|:.||||:||.||.
plant   854 QTLNTFRHVPEEPKSFSSFRERLHHLQRTEMDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQ 918

  Fly  3622 IRSTLTDKRERYYDSRGIGCYMFKIDDNLVVDATMRGNAARFINHCCEPNCYSKVVDILGHK-HI 3685
            :|.::.|.||..|...|..||:|||.:.:|||||.:||.||.|||.|.||||::::.:...: .|
plant   919 VRGSIADLREARYRRVGKDCYLFKISEEVVVDATDKGNIARLINHSCTPNCYARIMSVGDEESRI 983

  Fly  3686 IIFALRRIVQGEELTYDYKF-PFEDE--KIPCSCGSKRCRKYLN 3726
            ::.|...:..||||||||.| |.|.|  |:||.|.:..|||::|
plant   984 VLIAKANVAVGEELTYDYLFDPDEAEELKVPCLCKAPNCRKFMN 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781 18/116 (16%)
SET 3590..3710 CDD:214614 58/121 (48%)
SDG16NP_194520.3 WHSC1_related 205..308 CDD:99899 20/129 (16%)
PHD_SF 401..451 CDD:304600 7/51 (14%)
PHD_ATX3_4_5_like 594..640 CDD:276970 5/56 (9%)
ePHD_ATX3_4_5_like 649..760 CDD:277133 24/139 (17%)
SET 886..1004 CDD:214614 55/117 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm1076
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.870

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