DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trx and phf11

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:XP_021334650.1 Gene:phf11 / 569187 ZFINID:ZDB-GENE-081104-417 Length:531 Species:Danio rerio


Alignment Length:351 Identity:78/351 - (22%)
Similarity:126/351 - (35%) Gaps:94/351 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1736 MCLFCRKSGE-----GLSGEEARLLYCGHDCWVHTNCAMWSAEV-------FEEIDG-SLQNVHS 1787
            :|..|:.|.|     .||.:|        |...|.||.::|:.:       ::::.| .|::|..
Zfish    13 ICALCKTSDETETTGPLSSKE--------DISAHQNCLLFSSNIYCKNSPTYDDLFGFDLEDVKK 69

  Fly  1788 AVARGRMIKCTVCGNRGATVGCNVRSCGEHYHYPCARSIDCAFLTDKS-----MYCPAHAKNGNA 1847
            ...||:.::|..|...||||||.::.|...:|||||...|...:.|.|     :||.:|..|   
Zfish    70 EQRRGQKLRCYFCNKTGATVGCEIKRCPRSFHYPCAIKADARAIEDFSTGTYRVYCKSHDPN--- 131

  Fly  1848 LKANGSPSVTYESNFEVSRPVYVELDRKRKKLIEPARVQFHIGSLEVRQLGAIVPRFSDSYEAVV 1912
                     ..|.|.|:...|.:.|          |.|:.|:.:.:..|......|...|.|.  
Zfish   132 ---------PIEINDEIDNDVDLVL----------ASVEKHVPAEQHNQSTPDPERTRPSEEV-- 175

  Fly  1913 PINFLCSRLYWSSKEPWKIVEYTVRTTIQNSSSTLTALDV---GRNYTVDHTNPNSKEVQLGMAQ 1974
                         |.|.|.......|:.|.|..|.....:   .:.::.:|..|..|:.:     
Zfish   176 -------------KTPAKASSNGGLTSDQRSCGTADKRRIECDSQEHSPEHKTPTKKKKK----- 222

  Fly  1975 IARWHTSLARSEFLENGGTDWSGEFPNPNSCVPPDENTEEEPQQQADLLPPELKDAIFEDLPHEL 2039
                    .|.|:.:|.....:.....|....|.:..|..:|..... ||...:..       |.
Zfish   223 --------RRLEYPDNENPTSADAVMAPEVSAPEESMTVNQPNHSTP-LPENTRSC-------EK 271

  Fly  2040 LD----GISMLDIFLYDDKTDLFAIS 2061
            |:    |.:..|   .||:||:.::|
Zfish   272 LNLSTTGAAADD---EDDETDIESVS 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134 36/121 (30%)
FYRN 1891..1935 CDD:283589 7/43 (16%)
FYRC 3388..3476 CDD:197781
SET 3590..3710 CDD:214614
phf11XP_021334650.1 ePHD_PHF6_like 14..128 CDD:277143 36/121 (30%)
Herpes_BLLF1 <228..445 CDD:330317 16/78 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.