DRSC/TRiP Functional Genomics Resources

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Protein Alignment trx and Setmar

DIOPT Version :10

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_001020219.1 Gene:Setmar / 500281 RGDID:1565882 Length:315 Species:Rattus norvegicus


Alignment Length:422 Identity:85/422 - (20%)
Similarity:134/422 - (31%) Gaps:184/422 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly  3348 KEEQRTVSQEQ-----EQSKAAIVPTAAAPEPPQPIQEPKKMTGPHLLYEIQSEDGFTYKSSSIT 3407
            :|.:.|:.|:.     |....::.|..|.|.|     :|.:.|..|:                  
  Rat    18 EESEATIEQQDVACGLENLPVSLWPLGAGPRP-----KPFQYTPDHV------------------ 59

  Fly  3408 EIWEKVFEAVQVARRAHGLTPLPEGPLADMGGIQM-----IGLKTNALKYLIEQLPGVEKCSKYT 3467
                                   .||..||...|:     ..:||..       :||...|.::.
  Rat    60 -----------------------AGPGVDMDPTQITFPGCACIKTPC-------VPGTCSCLRHE 94

  Fly  3468 PKYHKRNGNVSTAANGAHGGNLGGSSASAALSVSGGDSHGLLDYGSDQDELEENAYDC-ARCEPY 3531
            ..|:                                |:..|.|.||:. :..:..::| ..|:  
  Rat    95 SNYN--------------------------------DNLCLRDVGSEA-KYAKPVFECNVLCQ-- 124

  Fly  3532 SNRSEYDMFSWLASRH-RKQPIQVFVQPSDNELVPRRGTGSNLPMAMKYRTLKETYKDYVGVFRS 3595
                        ...| |.:.:|                 |.|...::             ||::
  Rat   125 ------------CGEHCRNRVVQ-----------------SGLQFLLQ-------------VFQT 147

  Fly  3596 HIHGRGLYCTKDIEAGEMVIEYAGELIRSTLTDK----------------RERYYDSRGIGCYMF 3644
            ...|.||...:.|..|..|.|||||::..:...:                ||..|:.:.:..:  
  Rat   148 EKKGWGLRTLEYIPKGRFVCEYAGEVLGFSEVQRRIHLQTAHDPNYIIALREHTYNGQVMETF-- 210

  Fly  3645 KIDDNLVVDATMRGNAARFINHCCEPNCYSKVV--DILGHKHIIIFALRRIVQGEELTYDYKFPF 3707
                   ||.|..||..||:||.||||.....|  |.:..| :.:||.:.|:.||||:|||...|
  Rat   211 -------VDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPK-LALFAAKDILPGEELSYDYSGRF 267

  Fly  3708 -------EDEKI-------PCSCGSKRCRKYL 3725
                   :.|:|       ||.||::.|..:|
  Rat   268 LNQISSKDKERIDCGQPRKPCYCGAQSCATFL 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:413390
PRK13914 <1006..>1224 CDD:237555
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1890..1937 CDD:461787
FYRC 3388..3476 CDD:197781 12/92 (13%)
SET_KMT2A_2B 3575..3726 CDD:380947 51/183 (28%)
SetmarNP_001020219.1 SET_SETMAR 50..304 CDD:380942 77/385 (20%)
Blue background indicates that the domain is not in the aligned region.

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