DRSC/TRiP Functional Genomics Resources

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Protein Alignment trx and Su(var)3-9

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster


Alignment Length:743 Identity:161/743 - (21%)
Similarity:273/743 - (36%) Gaps:205/743 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  3069 NRVLPMQQRQEPAPLSNECPVVSSPTPPKPVEQPIIHQMT--SASVSKCYAQKSTLPSPVYEAE- 3130
            ||.|   |:|:.:.|.     ||..||..|  :.|..|.|  ..::......|||:...:...: 
  Fly    11 NRNL---QKQDLSNLD-----VSKLTPLSP--EVISRQATINIGTIGHVAHGKSTVVKAISGVQT 65

  Fly  3131 LKVSSVLESIVPDVTMDAILEEQPVTESIYTEGLYEKNSPGESKTEQLLLQQQQREQL---NQQL 3192
            ::..:.||..:                :|..|.|.||      |.:.||..:|||:|.   .:.:
  Fly    66 VRFKNELERNI----------------TIKLERLSEK------KIKNLLTSKQQRQQYEIKQRSM 108

  Fly  3193 VNNGYLLDKHT-FQ---VEPMDTDV---YREEDLEEEEDEDDDFSLKMATSA-------CNDHEM 3243
            :.:...|.:|: |:   .:|..:.:   ....|...........||..:.|:       |.:|::
  Fly   109 LRHLAELRRHSRFRRLCTKPASSSMPASTSSVDRRTTRRSTSQTSLSPSNSSGYGSVFGCEEHDV 173

  Fly  3244 SDSEEPAVKD--KISKILDNLTNDDCADSIATATTMEVDAS---AGYQQMVEDVLATTAAQSAPT 3303
              .:.|::..  |:.:...:.......:|..:...|.|.|.   .| :.:||.:......|..|.
  Fly   174 --DKIPSLNGFAKLKRRRSSCVGAPTPNSKRSKNNMGVIAKRPPKG-EYVVERIECVEMDQYQPV 235

  Fly  3304 --------EEFEGALETAAVEAAATYINEMADAHVLDLKQLQN----GVELELRRRKE-----EQ 3351
                    .:.|...|:.|..|....:.:..:.|    :||..    .:..||.::.|     |.
  Fly   236 FFVKWLGYHDSENTWESLANVADCAEMEKFVERH----QQLYEIYIAKITTELEKQLEALPLMEN 296

  Fly  3352 RTVSQ----EQEQSKAAIVPTA---AAPEPPQPIQEPKKMTGPHLLYEIQSEDGFTYKSSSITEI 3409
            .||::    |....:..::..|   ||....|  :||:|: |...|..:|.:.....:...:.::
  Fly   297 ITVAEVDAYEPLNLQIDLILLAQYRAAGSRSQ--REPQKI-GERALKSMQIKRAQFVRRKQLADL 358

  Fly  3410 WEKVFEAVQVARRAHGLTPLPEGPLADMGGIQMIGLKTNALKYLIEQLPGVE-----------KC 3463
              .:||    .|..|...|.|  |:.....|.:..:.:|.: |:.:.:.|.:           ||
  Fly   359 --ALFE----KRMNHVEKPSP--PIRVENNIDLDTIDSNFM-YIHDNIIGKDVPKPEAGIVGCKC 414

  Fly  3464 SKYTPKYHKRNGNVSTAANGAHGGNLGGSSASA-ALSVSGGDSHGLLDYGSDQDELEENAYDC-A 3526
            ::.|.:.     ..||.......|.|.....|. .|.:..|.:                .|:| :
  Fly   415 TEDTEEC-----TASTKCCARFAGELFAYERSTRRLRLRPGSA----------------IYECNS 458

  Fly  3527 RC---EPYSNRSEYDMFSWLASRHRKQPIQVFVQPSDNELVPRRGTGSNLPMAMKYRTLKETYKD 3588
            ||   ...|||        |....|:.|:.:|          :...||                 
  Fly   459 RCSCDSSCSNR--------LVQHGRQVPLVLF----------KTANGS----------------- 488

  Fly  3589 YVGVFRSHIHGRGLYCTKDIEAGEMVIEYAGELIRSTLTDKRERYYDSRGIGCYMFKIDDN---- 3649
                      |.|:.....:..||.|.||.||:|.|...::|.:.||..| ..|:|.:|.|    
  Fly   489 ----------GWGVRAATALRKGEFVCEYIGEIITSDEANERGKAYDDNG-RTYLFDLDYNTAQD 542

  Fly  3650 --LVVDATMRGNAARFINHCCEPN-----CYSKVVDILGHKHIIIFALRRIVQGEELTYDY---- 3703
              ..:||...||.:.||||.|:||     |:.:.::: ...|::.|.||.|..||||::||    
  Fly   543 SEYTIDAANYGNISHFINHSCDPNLAVFPCWIEHLNV-ALPHLVFFTLRPIKAGEELSFDYIRAD 606

  Fly  3704 --KFPFED----EKIPCSCGSKRCRKYL 3725
              ..|:|:    .::.|.||:..|||.|
  Fly   607 NEDVPYENLSTAVRVECRCGADNCRKVL 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781 16/98 (16%)
SET 3590..3710 CDD:214614 44/140 (31%)
Su(var)3-9NP_524357.2 P-loop_NTPase 41..>80 CDD:304359 6/54 (11%)
CHROMO 217..268 CDD:237991 9/51 (18%)
PreSET 362..455 CDD:128744 20/120 (17%)
SET 477..609 CDD:214614 46/170 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467618
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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