DRSC/TRiP Functional Genomics Resources

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Protein Alignment trx and phf6

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:XP_021336655.1 Gene:phf6 / 327070 ZFINID:ZDB-GENE-030131-5278 Length:376 Species:Danio rerio


Alignment Length:174 Identity:50/174 - (28%)
Similarity:76/174 - (43%) Gaps:36/174 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1727 GIKMRLDTRMCLFCRKSGEGLSGE----EARLLYCGHDCWVHTNCAMWSAEVFEEIDG-SLQNVH 1786
            |...||  |.|.|||.:.:...|:    |:..:...|.|.:.::..:.|....|.|.| |:::|.
Zfish     7 GASARL--RKCAFCRTNRDKECGQLLVAESHRVAAHHKCMLFSSALVTSHSDSENIGGFSIEDVK 69

  Fly  1787 SAVARGRMIKCTVCGNRGATVGCNVRSCGEHYHYPCA------------------RSIDCAFLTD 1833
            ..:.||..:.||.|...|||:||:|::|...|||.||                  :.:.......
Zfish    70 KEIKRGNKLMCTSCHRPGATIGCDVKTCRRTYHYYCALWDKAQTKENPSQGIYLRKQLQIGLEPG 134

  Fly  1834 KSMYCPAH---AKNGN----ALKANGSPSVTYES----NFEVSR 1866
            ||:||..|   :::|:    .:.||.|.|....|    .||.||
Zfish   135 KSVYCRKHRDASQDGSDDEQGVAANDSDSSPPRSRGRGRFEKSR 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134 35/126 (28%)
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781
SET 3590..3710 CDD:214614
phf6XP_021336655.1 PHD_SF 15..142 CDD:328929 35/126 (28%)
ePHD2_PHF6 223..340 CDD:277181
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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