DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trx and set1

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_587812.1 Gene:set1 / 2538762 PomBaseID:SPCC306.04c Length:920 Species:Schizosaccharomyces pombe


Alignment Length:1004 Identity:228/1004 - (22%)
Similarity:387/1004 - (38%) Gaps:280/1004 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  2834 SGVGKVPPQPQVVNKVLPTSIVTQQ-------SQVQVKNSNLKQSQVKGKAASGTGTTCGAPPSI 2891
            :.:|..||....|:.:.|  :||.:       |..:|.:.:||.:..       |||:.|    :
pombe    86 NSLGPEPPTQVFVSNISP--LVTSEQLRYHFKSFGEVFDLDLKLNPY-------TGTSLG----L 137

  Fly  2892 ASKPLQKKTNMIRPIHKLEVKPKVM-------KPTPKVQNQNHSLLQQQQQQQPQLQQQIPAVVV 2949
            ......|::::....|..::..:..       ||...|.:::.||.::      ..::.:.| |.
pombe   138 CCISFDKRSSISVAAHSAKIAVQQANGLRFSGKPLSVVLDRDGSLCEE------AFKKALNA-VE 195

  Fly  2950 NQVPKVTISQQRIPA--QTQQQQLQQAQMIHIPQQQQP-----------LQQQQVQ-VQPSMPII 3000
            .|..:.|:.:||...  ::.:|:|..|....||..:||           ||..:|| |......:
pombe   196 KQFQEETLQKQRFEREDESSRQKLSAAMNEDIPPWRQPSKNSQTLSNGDLQHSKVQNVDQKSGFL 260

  Fly  3001 TLAEAPV-----------VQSQFVMEPQALEQQELANRVQHF--------------STSSSSSSS 3040
            |.:|..|           :..:|| .|..:...::.:..:.|              :.::...:|
pombe   261 TSSETDVPKNINDYIYLLIDDRFV-PPDRVYYTDIKHHFRKFLYEKIYMNKDGFYITFNNYREAS 324

  Fly  3041 NC--SLPTNVVNPMQ-----QQAPSTTSSSTTRPTNR--VLPMQQRQEPAPLSNECPVVSSPTPP 3096
            ||  :|....|...:     ...||.|.....:...|  |||.::....|          :....
pombe   325 NCYRALDRTYVQNCRIKLKFHDIPSRTKEDGKKSAVRRVVLPPEEAYAEA----------TSVVL 379

  Fly  3097 KPVEQPIIHQMTSASVSKC-YAQKSTLPSPVYEAELKVSSVLESI-VPDVTM--DAILEEQP--- 3154
            :.:|..::..:.|..:... :....::|.|..:.||:.:.::.|. ||||.:  ::.:.:.|   
pombe   380 RDLEAALLRDVKSKIIGPAIFKYLHSMPKPSVKEELQENLLVSSTSVPDVPLKIESTVGKLPSLP 444

  Fly  3155 -----VTESIYTEGLYEKNSPGESKTEQLLLQQQQRE--------QLNQQLVNNGYLLDKHTFQV 3206
                 |..|       :.|....|||:..|.::::|.        ||||                
pombe   445 KFKKRVDSS-------KMNLSAGSKTKSKLQRRRRRRHEARPLHYQLNQ---------------- 486

  Fly  3207 EPMDTDVYREEDLEEEEDEDDDFSLKMATSACNDHEMSDSEEPAVKDKISKILDNLTNDDCADSI 3271
                  :|.....|.|.|:              :..:|..:|...:.||..| .::.:|:..   
pombe   487 ------MYNSSASEAESDQ--------------ELLLSSGDERVERGKIGSI-KSVKSDEAT--- 527

  Fly  3272 ATATTMEVDASAGYQQMVEDVLATTAAQSAPTEEFEGALETAAVEAAATYINEMADAHVLDLKQL 3336
                               .|.:.|:.::.....|                            :.
pombe   528 -------------------PVFSDTSDENDKFHRF----------------------------RT 545

  Fly  3337 QNGVELELRRRKEEQRTVSQEQEQSKAAIVPTAAAPEPPQPIQE----PKKMTGPHLLYEIQSED 3397
            ::.:..:...:.|...|.|.|.|...:.:.|:||.|:....|::    |||        ||.   
pombe   546 KSKISKKKYEKMEVDYTSSSETESDASILSPSAAIPKSGSAIKDELISPKK--------EID--- 599

  Fly  3398 GFTYKSSSITEIWEKVFEAVQVARRAHGLTP--LPEGP-LADMGGIQMIGLKTNALKYLIEQL-- 3457
                :..::...| ::.|..:.....:|..|  .||.. |.|:.|:|.:........||.|.|  
pombe   600 ----EVLALAPKW-RINEFDETGSVYYGALPYNYPEDDVLLDLDGLQYLVKNDEDYSYLQEALKD 659

  Fly  3458 --------PGVEKCSKYTPKYHKRNGNV---STA----ANGAHGGNLGGSSASAALSVSGGDSHG 3507
                    |......:.:.|:  :||:|   .||    ..|....|..||:.|....:.      
pombe   660 EPLMDINDPNFWAYERKSCKF--KNGDVKYGDTAILPEPKGYFRSNTSGSAKSEGYYII------ 716

  Fly  3508 LLDYGSDQDELEENAYDCARCEPYSNRSEYDMFSWLASRHRKQPIQVFVQPSDNELVPRRGTGSN 3572
                    ...|::.|     .|..|||..|..|...||...:..:|     :|..:......|.
pombe   717 --------PTTEKSLY-----LPLRNRSTIDTISHSTSRITSRMNRV-----NNRRLAAGVEKSQ 763

  Fly  3573 LPM---AMKYRTLKETYKD-YVGVFRSHIHGRGLYCTKDIEAGEMVIEYAGELIRSTLTDKRERY 3633
            ||.   .:::..||...|. :.|  .|.||..||:..::|:..:|||||.||:||..:.|.||:.
pombe   764 LPAEADLLRFNALKARKKQLHFG--PSRIHTLGLFAMENIDKNDMVIEYIGEIIRQRVADNREKN 826

  Fly  3634 YDSRGIG-CYMFKIDDNLVVDATMRGNAARFINHCCEPNCYSKVVDILGHKHIIIFALRRIVQGE 3697
            |...||| .|:|:||::::||||.:||.||||||.|.|||.::::.:.|.:.|:|:|.|.|:.||
pombe   827 YVREGIGDSYLFRIDEDVIVDATKKGNIARFINHSCAPNCIARIIRVEGKRKIVIYADRDIMHGE 891

  Fly  3698 ELTYDYKFPFEDEKIPCSCGSKRCRKYLN 3726
            |||||||||.|.:||||.||:..||.|||
pombe   892 ELTYDYKFPEEADKIPCLCGAPTCRGYLN 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781 19/100 (19%)
SET 3590..3710 CDD:214614 61/120 (51%)
set1NP_587812.1 RRM <90..>226 CDD:223796 30/155 (19%)
RRM_spSet1p_like 96..180 CDD:240749 17/96 (18%)
SET_assoc 279..342 CDD:288600 9/63 (14%)
SET 457..920 CDD:225491 151/593 (25%)
N-SET 641..771 CDD:288597 32/155 (21%)
SET 783..899 CDD:214614 57/117 (49%)
PostSET 904..920 CDD:214703 9/15 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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