DRSC/TRiP Functional Genomics Resources

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Protein Alignment trx and set-15

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_001370771.1 Gene:set-15 / 187813 WormBaseID:WBGene00020006 Length:611 Species:Caenorhabditis elegans


Alignment Length:619 Identity:115/619 - (18%)
Similarity:201/619 - (32%) Gaps:199/619 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  3229 FSLKMATSACNDHEMSDSEEPAVKDKI----SKILDN-----LTNDDCADSIATATTMEVDASAG 3284
            |..:..||..|       |:||.:.|.    ||.|:|     :..|....|...||         
 Worm    21 FRKRSVTSLAN-------EQPAKRSKTEGSDSKKLNNQMKRLMAKDPKKLSFNEAT--------- 69

  Fly  3285 YQQMVEDVLATTAA----QSAPTEEFEGALETAAVEAAATYINEMADAHVLDLKQLQNGVELELR 3345
               ::.::|.|...    :..|..:..|||..:.|:    :.|:    ...:.|.:::|      
 Worm    70 ---LLSELLTTCCTVERKKVIPKRKGGGALRKSPVD----FQND----ENRNTKPIKSG------ 117

  Fly  3346 RRKEEQRTVSQEQEQSKAAIVPTAAAPEPPQPIQEPKKMTGPHLLYEIQSEDGFTYKSSSITEIW 3410
             ||::...:.|..::.|.|             .:...::....::..::.:...| |:|..||..
 Worm   118 -RKKKDNLLEQASKKDKIA-------------AKYRNEIFAHSIIANLEIKKILT-KTSKATEKD 167

  Fly  3411 EKVFEAVQVARRAHGLTPLPE------------------GPLADMGGIQMIGLKTNALKYLIEQL 3457
            .|:|...:.:.| :.:...||                  ..:|||....|      |...|:..:
 Worm   168 LKLFLKAECSVR-NAIKSDPELDGFYVRTCGKLINKTVLNTMADMMDNHM------ATTRLLWNM 225

  Fly  3458 PGVEKCSKYTPKYHKRNGNVSTAANGAH---------GGNLGGSSASAALSVSGGDSHGLLDYG- 3512
            |..|    :...:|::  .|..|.|.::         ...|...|.|....:. |::|..:..| 
 Worm   226 PRHE----FPVDFHEK--FVDFALNVSYTPPKKRIFVEKKLFEKSISTFTDIP-GETHRTISLGN 283

  Fly  3513 -----------------------SDQDELEENAYDCARCEPYS-----NRSEYDMFSWLASRHRK 3549
                                   :::.|...|...|..|...|     |..:...|.......::
 Worm   284 TFVYKYTERNVVDVEKYPELHALTEEAERPNNVIRCECCSSGSIKKCWNNPDCFCFQMNLKLRKE 348

  Fly  3550 QPIQVFVQPSDNELVPRRGTGSNLPMAMKYRTLKETYKDYVG----------------------- 3591
            |      .|.:|:|:....|..  |:.::.|   ..:.|.:|                       
 Worm   349 Q------DPKNNKLLTDFSTFD--PVFIRER---NHFFDTIGFACSENCACGGKCTNNITLLPEK 402

  Fly  3592 ------VFR-SHIHGRGLYCTKDIEAGEMVIEYAGELIRSTLTDKRERYY--------------- 3634
                  ::| :.|.|..:.....|.||..|:|:.|||:...:.|..::.|               
 Worm   403 NINKFEIYRKNEIMGFAIRTLNSIPAGTPVMEFTGELMDFDILDNIDQDYAFEIVNEAHNLHETL 467

  Fly  3635 ---DSRGIGCYMFKIDDNLV----VDATMRGNAARFINHCCEPNCYSKVVDILG----HKHIIIF 3688
               :.|....:...:...|.    |:....||.||...|.|:||.....|...|    |..:::.
 Worm   468 PNFNKRWSENFKSSLKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVFQKGFSPAHCKLLLV 532

  Fly  3689 ALRRIVQGEELTYDYKFPFEDE-KIPCSCGSKRC 3721
            .|..|..|.|||:||...:.:| |..|.|....|
 Worm   533 TLEDIFPGVELTFDYGPGYLNELKGGCLCERIGC 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781 19/105 (18%)
SET 3590..3710 CDD:214614 36/175 (21%)
set-15NP_001370771.1 SET 405..554 CDD:214614 35/148 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165856
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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