DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trx and set-8

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_001359546.1 Gene:set-8 / 184086 WormBaseID:WBGene00008527 Length:407 Species:Caenorhabditis elegans


Alignment Length:422 Identity:92/422 - (21%)
Similarity:160/422 - (37%) Gaps:107/422 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  3384 MTGPHLLYEIQSEDGFTYKSSSITEIWEKVFEAVQVARRAHGLTPLPEGPLADMGGIQMIGLKTN 3448
            |..|..:.||...:||. .|:::..:..:     |...||...:.:|.|......|:  :.|...
 Worm     1 MMCPDHICEICFTEGFE-SSATLGNLLHE-----QSTIRAFHSSCMPAGYTEKNAGV--VSLNPR 57

  Fly  3449 ALKYLIEQLPGVEKCSKYTPKYHKRNGNVSTAANGAHGGNLGGSSASAA------LSVSGGDS-- 3505
            ..::|....|....|...||...|.:|.|.:.........|...|.|..      :.:..||.  
 Worm    58 IQEFLGTHFPACGTCGTSTPPMIKCSGCVHSFHRACFPMKLTEESKSHCESCVFDIRMRIGDEVL 122

  Fly  3506 --------HGLLD-----YGSDQDE--------------------LEENAYDCARCEPYSNRSEY 3537
                    .|:::     :.:.|||                    |..|:.    ..||| |...
 Worm   123 TEKDEIFCSGVIEDWNQNHFAKQDENFGKEGFASILFDGVGSRQILPINSL----FRPYS-RVTN 182

  Fly  3538 DMFSWLASRHRKQP-----IQVFVQPSDNELVPRRGTGSNLP----MAMKYRTLKE--------- 3584
            .:|..:.|.:...|     ::..:|..:::..|   ....:|    :::.:.|:||         
 Worm   183 IIFHSIKSMYNGHPQELENLKSMLQKIESQRPP---VSRPIPKFQSISIFHSTIKELLCHDDDFL 244

  Fly  3585 ----TYKDYVGVFRSHIHGRGLYCTKDIEAGEMVIEYAGELIRSTLTDKRERYYDSRGIGC---- 3641
                |.:|.:..|..: .|.|::.||.:|.|.::.:|.||.|    ::|.:...|:....|    
 Worm   245 PNVKTCEDLLLKFEKN-KGYGVFATKILENGCVIGQYCGEYI----SEKEKARRDALAKVCNDKE 304

  Fly  3642 ---YMFKIDDNLV---------VDATMRGNAARFINHCCEPNCYSKVVDI----LGHKHIIIFAL 3690
               |.|::...|:         ||.:...|....:|..|||||.:.|.:|    :..::|:|...
 Worm   305 CKFYSFQVKLELLNELQAQKVYVDGSSVKNITAILNTSCEPNCTAIVEEISIQNIRIEYIVIKTK 369

  Fly  3691 RRIVQGEELTYDYKFPFEDEKIPCSCGSKRCR 3722
            |.|..|||||.:||:   :....|.|||::|:
 Worm   370 RTIKVGEELTINYKW---NSSFKCFCGSEKCK 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781 18/87 (21%)
SET 3590..3710 CDD:214614 39/139 (28%)
set-8NP_001359546.1 SET <106..400 CDD:225491 67/309 (22%)
SET 251..389 CDD:214614 40/145 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165878
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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