DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trx and set-32

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_492529.2 Gene:set-32 / 183391 WormBaseID:WBGene00008062 Length:517 Species:Caenorhabditis elegans


Alignment Length:625 Identity:110/625 - (17%)
Similarity:183/625 - (29%) Gaps:229/625 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  3168 NSPGESKTEQLLLQQQQREQLNQQLVNNGYLLDKHTFQVEPMDTDVYREEDLEEEEDEDDDFSLK 3232
            :|..:|:|::.|.|...|..:.:.|.:|..:.:...|:.| .|..:|.....||..       ..
 Worm     2 SSKSKSRTKKKLRQHSSRGPITEMLASNMCIFEAPPFKAE-QDFPIYLAAGYEERR-------TF 58

  Fly  3233 MATSACNDHEMSDSEEPAVKDKISKILDNLTNDDCADSIATATTMEVDASAGYQQMV----EDVL 3293
            :..|||......|.|.  ......|:|:.:.||...:              |..:::    |||.
 Worm    59 LKESACLVETKPDVEN--YSQSHVKVLNKIRNDPHLN--------------GNWKLLPKYDEDVK 107

  Fly  3294 ATTAAQSAPTEEFEGALETAAVEAAATYINEMADAHVLDLKQLQNGVELELRRRKEEQRTVSQEQ 3358
            .|                                                :.|...::..:||.:
 Worm   108 GT------------------------------------------------MMRILGQRAMISQGR 124

  Fly  3359 EQSKAAIVPTAAAPEPPQ--PIQEPKKMTGPHLLYEIQSEDGFTYKSSSITEIWEKVFEAVQVAR 3421
            |..      .:..|:..|  |:..|..:| |.  ..|:..:..|:.:..|..::           
 Worm   125 EHE------ISTCPDSGQDVPLLSPTYIT-PR--KRIRVTENLTFNTLDIVPVY----------- 169

  Fly  3422 RAHGLTPLPEGPLADMGGIQMIGLKTNALKYLIEQLPGVEKCSKYTPKYHKRNGNVSTAANGAHG 3486
                 :.||:..|..:                  |:|.       |..:...:.||   .|....
 Worm   170 -----SDLPDEKLTSI------------------QIPD-------TLLFEYTDTNV---LNPCSA 201

  Fly  3487 GNLGGSSASAALSVSGGDSHGLLDYGSDQDELEENAY--DCARCEP----YSNR----------- 3534
            .|:    |.|.:                ..:.|||..  ||....|    |.|.           
 Worm   202 RNI----AKACI----------------MSQKEENTIRCDCCSSNPIVPCYENENCPCYKLNQKL 246

  Fly  3535 ------------SEYDMFSWLASRHRKQPIQVFVQPSDNELVPRRGTGSNLPMAMKYRTL--KET 3585
                        :::..|..:...:........:..|.:|....:|..:|..:.:..:.|  .|.
 Worm   247 QGLQINSSSHPPTKFASFDPVMFSNSNSTFDRCIGFSCSEACGCKGNCTNNSLLILNKKLFPLEI 311

  Fly  3586 YKDYVGVFRSHIHGRGLYCTKDIEAGEMVIEYAGELIRSTLTDKRERYYDSRGIGCYMFKIDDN- 3649
            |:....|      |.||..:..|.||..|:|:.||::.....|:..:.|      .|.....|| 
 Worm   312 YRSNENV------GFGLRSSVLIPAGTAVLEFTGEIVERNQLDRDSQDY------AYQLTDKDNS 364

  Fly  3650 --------------------------LVVDATMRGNAARFINHCCEPN-----CYSKVVDILGHK 3683
                                      ..:|...:||..|.|.|.|.||     .|.|.:. ..|.
 Worm   365 NWRRLLDTMKFSDDYKKFLKKLSYEEFFIDPKAKGNVGRMICHSCSPNLEIVRVYQKGLS-PAHV 428

  Fly  3684 HIIIFALRRIVQGEELTYDYKFPFEDEKI--PCSCGSKRC 3721
            |::..:|..|..|..||.||.:.:....:  .|.|||..|
 Worm   429 HLVFISLLNIYPGTPLTMDYGYNYMKNHLNGKCECGSFAC 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781 9/87 (10%)
SET 3590..3710 CDD:214614 36/151 (24%)
set-32NP_492529.2 SET 307..455 CDD:214614 38/160 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165854
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.