DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trx and set-6

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:NP_510003.2 Gene:set-6 / 181371 WormBaseID:WBGene00008206 Length:708 Species:Caenorhabditis elegans


Alignment Length:648 Identity:123/648 - (18%)
Similarity:221/648 - (34%) Gaps:202/648 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  3230 SLKMATSACNDHEMSDSEEPAVKDKISKILDNLTNDDCADSIATATTMEVDASAGYQQMVEDVLA 3294
            ::.:.|.:.:|.|::..|||    :.|.|..|..:|:...|:::.:...|:.|.        ::.
 Worm    18 NVPIITISDDDDELTIWEEP----RKSPISSNSYSDERNHSLSSTSNSSVERSI--------IIT 70

  Fly  3295 TTAAQSAPTEEFEGALETAAVEAAATYINEMADA--------HVLDLKQLQNGVELELRRRKEEQ 3351
            .:..:|..||..:..:...|:.      |.:.:.        |.|..|:.    :||::.|| :.
 Worm    71 ISDDESEATERNQQEVVDRAIS------NNLTEKRRRSVESFHRLHSKER----KLEVKSRK-KS 124

  Fly  3352 RTVSQEQEQSKAAIVP-----------------TAAAPEPPQPIQEPKKMTGPHLLYEIQSEDGF 3399
            ||.|...|.|.:...|                 ::.||.......|.:.: .|..:.:.:....|
 Worm   125 RTSSSSMEASTSCTFPARQTKTKRHKRKTYSTISSFAPHHSTICAELRNV-NPARIADFRHPSIF 188

  Fly  3400 TYKSSSIT---EIWEKVFEAVQV---ARRAH----------GLTPLPEGPLADMGGIQMIGLKTN 3448
            .|...|:.   |.|:|..:.::.   .|..|          .|.|...|......|.:.   .|.
 Worm   189 EYSDMSLNERREHWKKEMKVIKKHNDIRLMHEEAVRFDDIIELDPTLNGYYRRFMGAEQ---STR 250

  Fly  3449 ALKYLI--------------------EQLPGVEKCSKY-------TPKYHKRNGNVSTAANGAHG 3486
            ||...:                    |::|  |:..:|       .|:...|..:....:|..|.
 Worm   251 ALFMAVRCLATFGRNFYEEPERDHGEEEIP--EELDRYFEKLIYVAPRTRIRITDDIHLSNDTHR 313

  Fly  3487 GNLGGSSASAALSVSGGDSHGLLDY--GSDQDELEE-----------NAYDCARCEPYSNRSEYD 3538
            ..:...:....|......:..|.|:  .:..|:::|           ::.:..||:..|.....:
 Worm   314 IPVYTDAKGETLKTVKIPNPLLYDHIINNMVDKVKEPLLYEAIKIAGSSENVIRCKCCSQDPVVN 378

  Fly  3539 MFSWLASRHRKQPIQVFVQPSDNELVPRRGTGSNLPMAMKYRTLK--------ETYKDYVG---- 3591
            .|.       .:....|:.   |:.:..|...::....:|:.|.:        .||.:.||    
 Worm   379 CFD-------NKDCPCFIA---NQFLQSRNKTTDTNEKLKFHTFQPLMYNDGNPTYYNTVGFACS 433

  Fly  3592 -------------------------VFRSHIH-GRGLYCTKDIEAGEMVIEYAGELIRS------ 3624
                                     ::|:... |.|:..|..|.||..:|||.|||:..      
 Worm   434 PKCACKGACTNNATYLIQKKLYSIEIYRADPQIGFGIRSTLFIPAGTPIIEYCGELVDGERLHSS 498

  Fly  3625 ------TLTD----------KRERYYDSRGIGCYMFKIDD----NLVVDATMRGNAARFINHCCE 3669
                  .|||          .||:|.::..   |...:|:    :..:||.|:|:..||.||.|.
 Worm   499 LENYSYQLTDCEGDKHLYNLLREKYKNNPE---YYDVLDELSKHHFHLDAKMQGSVGRFANHSCT 560

  Fly  3670 PNCYSKVVDIL---------GHKHIIIFALRRIVQGEELTYDYKFPFE-DEKIPCSCGSKRCR 3722
            ||     ::.|         .:..:|.|.|:.|..||.||.||...:: ..:..|.|.:..||
 Worm   561 PN-----MEPLRLFKEGFTPANMRMIFFTLKDIFPGEPLTLDYGSEYKVFRRQRCLCRTFACR 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381
PHD1_KMT2A_like 1268..1344 CDD:276981
PHD 1346..1390 CDD:214584
PHD3_KMT2A_like 1423..1479 CDD:276983
ePHD_KMT2A_like 1737..1841 CDD:277134
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781 21/130 (16%)
SET 3590..3710 CDD:214614 45/185 (24%)
set-6NP_510003.2 SET 455..603 CDD:214614 43/155 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165855
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.