DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trx and tcf20

DIOPT Version :9

Sequence 1:NP_476769.1 Gene:trx / 41737 FlyBaseID:FBgn0003862 Length:3726 Species:Drosophila melanogaster
Sequence 2:XP_002934760.2 Gene:tcf20 / 100038081 XenbaseID:XB-GENE-484162 Length:1849 Species:Xenopus tropicalis


Alignment Length:2168 Identity:422/2168 - (19%)
Similarity:671/2168 - (30%) Gaps:745/2168 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SKFPGKPSKSINRKRISVLQLEDDAANPAEPQQPAPESQQPSGSGSGSSAAREKGNNCDNDEDDN 68
            :|..|.|:....::|.|         .|.:...| |::...||:..|:...|| |::.......:
 Frog    81 NKEGGTPASQTPQRRPS---------GPVQSYGP-PQANSSSGTNFGTPYGRE-GHHSQFANQHS 134

  Fly    69 APGGASISGNTASSSAGSGNSGNGSSSGSST------GSGSSGSGSTNGGSVNGGTHHKSAANLD 127
            |.|..|.......||...|.|...|...|..      .|..|.|.|.|..:..|.:|.:..    
 Frog   135 AAGNLSQYSQDFPSSFSPGGSQYPSHVTSQQLRQQLYQSHQSLSQSGNPPTSAGASHLQQI---- 195

  Fly   128 KEAVTKDQNGDGDKTRGNVSSAPSG-KLSAAASGKALSKSSRTFSASTSVTSSGRSSGSSPDGNS 191
                          .|....::|:| :|.....|:....|..  |:|:|..||.|...:.|: ..
 Frog   196 --------------QRSTALNSPAGYQLRMGQYGQHYQPSPG--SSSSSFPSSQRFGQTGPN-YE 243

  Fly   192 GASSDGASS-------GISCGKSTAKSTEAS-------SGKLAKTTGAGTCSS----------AK 232
            |.|..||||       |.|.|.....|:.||       :.||.:..|.|....          :.
 Frog   244 GYSPGGASSTYESHMPGSSYGTQQGFSSYASQHMKSFETSKLPQNVGQGQSQQQQQTSHVMQYSN 308

  Fly   233 SSK----ASSGTTSEATTSGLSGACLKALFVATPATSTGLACALV-SPGGSSQGGTFPISAALLR 292
            |||    :.:|..|::.....|....:..|  :|.::...|.::| ||..||.......|.    
 Frog   309 SSKLPLQSQTGQYSQSEVPVRSPMQFQQNF--SPISNPSPAASVVQSPSCSSTPSPLMTSG---- 367

  Fly   293 ARKNSNKKFKNLNLARGEVMLPSTSKLKQLNSPVVDNPSPSPPIASGSTPSVEG--GIGVGG--- 352
                     :||...:|.|.|.|.:::.|:      .|..||      ||...|  |.||.|   
 Frog   368 ---------ENLTCGQGNVPLSSRNRILQM------MPQLSP------TPHGGGFKGFGVEGPPD 411

  Fly   353 --VVSPGED--AALKRVLTEMPNEV-------ARDPSPSS-------CTAAANGAASGKGSASNG 399
              :..||..  :||...:..:||.|       |..|:..|       ..:.||...|.:......
 Frog   412 KRLTDPGLSSLSALSSQVANLPNTVQHMLLSDALAPNKKSGKRTSRKADSCANSETSSQAEEQLK 476

  Fly   400 PPAMASSGDGSSPKSGAD--------TGPSTSS--------------------------TTAKQK 430
            .| ||.|.|||...|..|        :|.||||                          |.|::.
 Frog   477 SP-MAESLDGSCSSSSGDPGERVRQLSGQSTSSEAGYKGTSSEKPASPTQGWSTELSEKTQAEEV 540

  Fly   431 KTV-----TFRNVLETSDDKSVVKRFYNPDIRIPIVSIMKKDSLNRPLNYSRGGECIVRPSILS- 489
            :||     ||:.|.:.| :|||                               |..:...::.: 
 Frog   541 ETVPEATETFQEVSKVS-EKSV-------------------------------GVIVAMETVATR 573

  Fly   490 --KILNKNSNIDKLNSLKFRSAGASSSSSNQESGSSSNVFGLSRAFGAPMDEDDEGGVTFRRNDS 552
              |:..::|.:|                                                  ||.
 Frog   574 SEKVTEESSTLD--------------------------------------------------NDE 588

  Fly   553 PEDQNNAEDDEMDDDDDDEEAEEDDENEDDNDEAVSEKSAETEKSAGADERDPDEKQLVMDSHFV 617
            .|..:..|..|...|||:.:....|:|.:.:| |.|:....|..::..:.:.|      :.|.|.
 Frog   589 VETSSQPEVPETVKDDDNVKECPPDQNGEPSD-ADSQPVPITSSTSRTEAKSP------VGSGFS 646

  Fly   618 LPKRSTRSSRIIKPNKRLLEEGAISTKKPLSLGDSKGKNVFGTSSSSAGSTASTFSASTNLKLG- 681
            . |....|||           .|.:..:.|...||.|....|...|..|......|....:..| 
 Frog   647 F-KEGATSSR-----------NASNLPQHLKTPDSAGCGGQGDKKSGTGRNDKYPSLLQEVLQGH 699

  Fly   682 --KETFFNFGTLKP----NSSAAG---NFVLRQ----PRLQFQADNQQATFTAPKACPTSPSAIP 733
              :|..:...|..|    .||.|.   |.::.|    |...............|...|....:.|
 Frog   700 HQQERRYARNTQDPPPVTGSSEASLRPNILMSQASELPNRNILGKTLAPHLETPNWGPWDRKSAP 764

  Fly   734 --KPANSLATSSFGSLASTNSSTVTPTPSACSICSAVVSSKEVTQARKYGVVACDV--CRKFFSK 794
              ||.|   .:.:    |.....|.| |::....|.:.|.:.        .|.||:  .|:....
 Frog   765 DVKPLN---VTDY----SARKFEVDP-PASSQESSGIPSERR--------SVICDISPLRQLVRD 813

  Fly   795 MTKKSISANSSTANTSSGSQQYLQC--------KGNEGSPCSIHSAKSQLKNFKKFYKDRCTACW 851
            .|.........:|:..||....|..        ..|:|.     :.|.|.....|.::.|.|   
 Frog   814 PTASHHVGQERSADGRSGQSVILPSGMISLDAKSSNQGG-----TPKEQDTEATKMHRKRTT--- 870

  Fly   852 LKKCMISFQLPAAHRSRLSAILPPGMRGEAAAREE--KSAELLSPTGS-----LRFTSTASSSSP 909
             ..|:       .:.::.||      ||..:.|..  ...:..||..|     .|.|:...:...
 Frog   871 -DHCI-------PYSTKESA------RGNGSPRSMTFDPTQDYSPHNSRGPHPRRGTARVGARGR 921

  Fly   910 SVVASTSVKWK-SSGDSTSALTSIKPNP---LAENNVTFGSTPLLRPAILENPLFLKISNAADQK 970
            |.|.....|.| |.|.|.....:...||   |:|.    .|......|..:|.....:|..::.:
 Frog   922 SPVQDLGDKMKMSPGRSRGPAETHHMNPTMSLSER----ASREAFYSAFFQNADNAALSYHSNSR 982

  Fly   971 LAAAEAISPSLTK----KNSKQEKEKVKESEQSEKLLSPTQAGTKKSGAAEAQVEEVQPQKEE-- 1029
            .::.....|:.|.    |....::|:.||...| .:||.:|        ...:::...|::|:  
 Frog   983 ASSYGEPHPTFTSPLHYKRPVYQQEEFKEWLGS-SILSASQ--------HRQEMQRKSPRQEQFH 1038

  Fly  1030 --AP-----QTSTTTQPSASNGASHGVPQAEL--------AGETNATGDTLKRQRIDLKGPRVK- 1078
              :|     :.....||    ||.|.....|.        .|.||.|...|||..  .|.|.|. 
 Frog  1039 VRSPGRVENEVMVYNQP----GAYHDSSSLEYGRQLRVGEGGPTNLTALELKRNA--QKTPPVDS 1097

  Fly  1079 ---HVCRSASIV--LGQPLAT----FG-------------------------------EDQQPED 1103
               ::.|..|.|  ||.|:.|    |.                               |:|...:
 Frog  1098 TNWNLGRQTSPVKKLGSPVGTNQKPFSSGRETDTLVHRSGEGTEISKPGCNAHRPQGTEEQSHHN 1162

  Fly  1104 AADMQQEI---AAPVPSAIMEPSPEK---PTHIVTDENDNCASCKT----------SPVGDE--- 1149
            ...|::.:   .:|:||. .:|..:|   |...|.:.:|..:..:.          |||.||   
 Frog  1163 PLIMRRRVRSFISPIPSK-RQPGDDKGRLPVSNVKETSDRTSVSQVLTSRSKESGFSPVADEPHK 1226

  Fly  1150 -----SKPSKSSGSAQAEVK----------KATALGKEGTASAAGGSSAKVTTRNAAVA---SNL 1196
                 :.||..|.|:.|:.|          |..|:.::.|:......||..::.:||.|   .::
 Frog  1227 GGPEQTSPSAVSLSSPAKTKILPPRKGRGLKLEAIVQKITSPNVRRISAPSSSESAAEAVTLDDI 1291

  Fly  1197 IVAASKKQRNG---------------DIATSSSVTQSSNQTQG--------RKTKEHRQQRTLIS 1238
            :....|...:|               ||:.|...|..|...:.        :|.|...:::::.:
 Frog  1292 LSLKIKGPESGKGSMQEAELPGVVGPDISCSEETTAKSLPPKSLDVWAHDEKKIKTEMEEQSMET 1356

  Fly  1239 IDFWENYDPAEVC---QTGFGLIVTETVAQRALCFLCGSTGLDPLIFCACCCEPYHQYCVQDEYN 1300
            .||..:..||:..   ..|.|.                ||.|:|.     |..|..|        
 Frog  1357 KDFSMSGLPAQASNHYMDGKGT----------------STALEPK-----CVLPQVQ-------- 1392

  Fly  1301 LKHGSFEDTTLMGSLLETTVNASTGPSSSLNQLTQRLNWLCPRCTVCYTCNMSSGSKVKCQKCQK 1365
             :|.:.|...|.|:                                  .||::...:|   ..||
 Frog  1393 -QHENVEKEKLAGT----------------------------------PCNVTPKQEV---IPQK 1419

  Fly  1366 NYHSTCLGTSKRLLGADRPLICVNCLKCKSCSTTKVSKFVGNLPMCTGCFKLRKKGNFCPICQRC 1430
            .|..:  |..|     .||:..||                           .:||....|:    
 Frog  1420 GYFPS--GKKK-----GRPVGSVN---------------------------KQKKQQQQPL---- 1446

  Fly  1431 YDDNDFDLKMMECGDCGQWVH---------SKCEGLS----DEQYNLLSTLPESIEFICKKCARR 1482
                     |.|.|      |         :....|.    ||..::....|:...   ::..||
 Frog  1447 ---------MQEQG------HQQPPPPVSPASVSALPPQHLDEHLDISEAEPKPKR---RRTERR 1493

  Fly  1483 NESSKIKAEEWRQA------VMEEFKASLYS--VLKLLSKSRQACALLKLSPRKKLRCTC----- 1534
            ..:...:....:||      :..|.|....|  :.|..:|::.....:.:..:::|..:|     
 Frog  1494 KPTGAPRRRRGKQAAPIVAPIEPEIKLKYASQNLDKPETKTKSFIPYIHVENKEELGLSCVIINA 1558

  Fly  1535 -----------------GASSNQGKLQPKALQFSSGSDNG----------------LGSDGESQN 1566
                             .::|.|.....|||..||....|                .|.....:|
 Frog  1559 EEEEQHWKKLTSVRKGQRSASPQPSTDSKALPSSSFMVQGPVVTESATMGHLVCCLCGKWANYRN 1623

  Fly  1567 SDDVYEFKDQQQQQQQRNANMNKPRVKSLPCSCQQHISHSQSFSLVDIKQKIAGNSYVSLAEFNY 1631
            ..|:  |.....|:.....:.|.|..||           |::...|.::.|...:.         
 Frog  1624 LGDL--FGPFYNQEYASTLSKNPPPKKS-----------SETPRKVKVRHKDTSDG--------- 1666

  Fly  1632 DMSQVIQQSNCDELDIAYKELLSEQ-----FPWF--QNETKACTDALEEDMFESCSGGNYEDLQD 1689
                  .:|:.||.:....:...||     .|.:  :|.:..||.:       ..:..::....|
 Frog  1667 ------SKSDSDEEEEEEPQQAREQRSLTAHPRYKRRNRSGDCTSS-------RLTVPSHRKTTD 1718

  Fly  1690 TGGVSASVYNEHSTSQAESRSGVLDIPLEEVDDFGSCGIKMRLDTRMCLFCRKSGEGLSGEEARL 1754
            ...::....:..||::|....|| .||            ::.||:                    
 Frog  1719 PSELTPMDSSGPSTAEAGPEQGV-QIP------------QLPLDS-------------------- 1750

  Fly  1755 LYCGHDCWVHTNCAMWSAEVFEEIDGSLQNVHSAVARGRMIKCTVCGNRGATVGCNVRSCGEHYH 1819
                ::.|:|..|.:|:..|: .:.|.|..:..||...|.:||:.|...|||:||..:.|...||
 Frog  1751 ----NEFWMHEGCVLWANGVY-FVCGRLYGLREAVDIAREMKCSHCQETGATLGCYNKGCACCYH 1810

  Fly  1820 YPCARSIDCAFLTDK-SMYCPAH 1841
            :|||...:|....:. |:.||.|
 Frog  1811 FPCAMDSECLLNEENFSVRCPKH 1833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trxNP_476769.1 NR_DBD_like 762..>856 CDD:295381 18/103 (17%)
PHD1_KMT2A_like 1268..1344 CDD:276981 11/75 (15%)
PHD 1346..1390 CDD:214584 11/43 (26%)
PHD3_KMT2A_like 1423..1479 CDD:276983 9/68 (13%)
ePHD_KMT2A_like 1737..1841 CDD:277134 28/104 (27%)
FYRN 1891..1935 CDD:283589
FYRC 3388..3476 CDD:197781
SET 3590..3710 CDD:214614
tcf20XP_002934760.2 ePHD_TCF20 1612..1833 CDD:277169 59/293 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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