DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MetRS-m and Mars1

DIOPT Version :9

Sequence 1:NP_001262564.1 Gene:MetRS-m / 41733 FlyBaseID:FBgn0027083 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001165053.1 Gene:Mars1 / 216443 MGIID:1345633 Length:910 Species:Mus musculus


Alignment Length:630 Identity:151/630 - (23%)
Similarity:243/630 - (38%) Gaps:144/630 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 VTTPIFYVNAAPHIGHLYSAVI-ADAHCRYQRLRYPEQDVRLCTGTDEHGTKIQQAASLHGVPVA 85
            :|:.:.|||..||:|::...|: ||...||.||| ....:.|| ||||:||..:..|...|:...
Mouse   270 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLR-QWNTLYLC-GTDEYGTATETKAMEEGLTPR 332

  Fly    86 KYCDDISQRYREVFRSASIQQDDFIRTTEDRHKRAVANFWRTLHTRGHIYSAAYSGWYCVSDETF 150
            :.||.....:.:::|...|..|.|.|||..:..:...:.::.|.|||.:.........|.....|
Mouse   333 EICDKYHAIHADIYRWFGISFDTFGRTTTPQQTKITQDIFQRLLTRGFVLRDTVEQLRCERCARF 397

  Fly   151 LTDSQLR-------LDEATGTR--------YSLESGHPVEWTEETNYMFRLSQ--FQDDVRHWVK 198
            |.|..:.       .:||.|.:        .::|...|......:..:.|.||  |.|       
Mouse   398 LADRFVEGVCPFCGYEEARGDQCDRCGKLINAIELKKPQCKICRSCPVVRSSQHLFLD------- 455

  Fly   199 TEARVRPAKFEKILLDTLSEPLPDVSVSRPSNR-------------------VHWAIPVPDD--D 242
                  ..|.||.|.|.|.:.:|. |...|:.|                   :.|..|||.:  :
Mouse   456 ------LPKLEKRLEDWLGKTVPG-SDWTPNARFIIRSWLRDGLKPRCITRDLKWGTPVPLEGFE 513

  Fly   243 SQTVYVWLDALVNYLSSVGYPDEKFSAHWPPAQQV-----IGKDILKFHGIYWTAFLLAAGLEPP 302
            .:..|||.||.:.|:|......:::...|...:||     :.||.:.|||:.:...:|  |.|..
Mouse   514 DKVFYVWFDATIGYVSITANYTDQWEKWWKNPEQVDLYQFMAKDNVPFHGLVFPCSVL--GAEDN 576

  Fly   303 GQLYVH----SHWTVDGQKMSKSKH-NVVDPLQAAQQYTMEGLRYFLLREGVAHSDGNYSHVKAQ 362
            ..|..|    .:...:..|.|||:. .|...:........:..|::||.......|..:|.....
Mouse   577 YTLVKHIIATEYLNYEDGKFSKSRGIGVFGDMAKDTGIPADIWRFYLLYIRPEGQDSAFSWTDLL 641

  Fly   363 RILNSELADTLGNLLSRAS------------AKSLNPGQ----IYPSPSAEHLADLLRSLDVAKR 411
            ...||||.:.|||.::||.            ..:|.|..    .:.|...:|...||..:.:...
Mouse   642 IKNNSELLNNLGNFINRAGMFVSKFFGGCVPEMALTPDDRRLVAHVSWELQHYHQLLEKVRIRDA 706

  Fly   412 LQDSLLQLSERCESHYECNHFHLVADTTMAALHAANNFFESSKPW-TLKAGAPDGNQARLETIIA 475
            |: |:|.:|..                       .|.:.:.::|| .:|.|..|  :.|..|:..
Mouse   707 LR-SILTISRH-----------------------GNQYIQVNEPWKRIKGGEMD--RQRAGTVTG 745

  Fly   476 MTMDALRLSGIVLQPIIPQLANRLLDKLSVPTAQRGWNYLAESFATSPNSSNSPAG--LGESRQL 538
            |.::...|..::|||.:|.:::.:..:|.:|.|  ....||.||..:     .|||  :|     
Mouse   746 MAVNMAALLSVMLQPYMPTVSSTIQTQLQLPPA--ACRILATSFICT-----LPAGHRIG----- 798

  Fly   539 DGQTSALLFQRI----------------LEETSAKEVKEQKPQPA 567
               |.:.|||::                |||:...:.| ..|:||
Mouse   799 ---TVSPLFQKLENDQIENLRQRFGGGQLEESLELKAK-GSPKPA 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MetRS-mNP_001262564.1 MetRS_core 20..356 CDD:173907 95/382 (25%)
PRK11893 21..553 CDD:237012 145/614 (24%)
Anticodon_Ia_like 365..503 CDD:299868 33/154 (21%)
Mars1NP_001165053.1 Thioredoxin_like 1..68 CDD:294274
GstA <47..189 CDD:223698
GST_C_MetRS_N 77..179 CDD:198340
PRK12268 266..821 CDD:237029 144/609 (24%)
MetRS_core 267..635 CDD:173907 95/382 (25%)
'HIGH' region 275..285 5/9 (56%)
'KMSKS' region 595..599 2/3 (67%)
Anticodon_Ia_Met 644..773 CDD:153411 33/154 (21%)
MetRS_RNA 855..899 CDD:238475
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.