DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dop1R1 and Htr6

DIOPT Version :10

Sequence 1:NP_001262563.1 Gene:Dop1R1 / 41726 FlyBaseID:FBgn0011582 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_077341.2 Gene:Htr6 / 64354 RGDID:62044 Length:438 Species:Rattus norvegicus


Alignment Length:322 Identity:123/322 - (38%)
Similarity:174/322 - (54%) Gaps:21/322 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 VGIFLSVLIFLSVAGNILVCLAIYTERSLRRIGNLFLASLAIADLFVASLVMTFAGVNDLLGYWI 195
            |...|.|:|.|:.|.|.|:.:.|.|:.:||...|.||.||..:||.|..:||..|.:|.|.|.|:
  Rat    29 VAAALCVVIVLTAAANSLLIVLICTQPALRNTSNFFLVSLFTSDLMVGLVVMPPAMLNALYGRWV 93

  Fly   196 FGAQFCDTWVAFDVMCSTASILNLCAISMDRYIHIKDPLRYGRWVTRRVAVITIAAIWLLAAFVS 260
            .....|..|.||||||.:|||||||.||:|||:.|..||||...:|...|:..|...|.|||..|
  Rat    94 LARGLCLLWTAFDVMCCSASILNLCLISLDRYLLILSPLRYKLRMTAPRALALILGAWSLAALAS 158

  Fly   261 FVPISLGIHRPDQPLIFEDNGK-KYPT---CALDLTPTYAVVSSCISFYFPCVVMIGIYCRLYCY 321
            |:|:.||.|         :.|| :.|.   |.|..:..:.:|:|.::|:.|...:...|||:...
  Rat   159 FLPLLLGWH---------ELGKARTPAPGQCRLLASLPFVLVASGVTFFLPSGAICFTYCRILLA 214

  Fly   322 AQKHVKSIKAVT--RPGEVAEKQRYKSIRRPKNQPKKFKVRNLHTHSSPYHVSDHKAAVTVGVIM 384
            |:|....:.::|  ..|:..|..:..  |.|:...:....|.|.|..|...:   ||::|:|:::
  Rat   215 ARKQAVQVASLTTGTAGQALETLQVP--RTPRPGMESADSRRLATKHSRKAL---KASLTLGILL 274

  Fly   385 GVFLICWVPFFCVNITAAFCKTCIGGQTFKILTWLGYSNSAFNPIIYSIFNKEFRDAFKRIL 446
            |:|.:.|:|||..||..|.| .||....|.:||||||.||..|||||.:|.::|:.|..|.|
  Rat   275 GMFFVTWLPFFVANIAQAVC-DCISPGLFDVLTWLGYCNSTMNPIIYPLFMRDFKRALGRFL 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dop1R1NP_001262563.1 7tmA_Ap5-HTB1-like 130..442 CDD:320193 120/316 (38%)
TM helix 1 130..156 CDD:320193 9/24 (38%)
TM helix 2 163..189 CDD:320193 11/25 (44%)
TM helix 3 201..231 CDD:320193 20/29 (69%)
TM helix 4 243..265 CDD:320193 9/21 (43%)
TM helix 5 292..321 CDD:320193 7/28 (25%)
TM helix 6 371..401 CDD:320193 12/29 (41%)
TM helix 7 410..435 CDD:320193 14/24 (58%)
Htr6NP_077341.2 7tmA_5-HT6 29..331 CDD:320182 120/316 (38%)
TM helix 1 29..54 CDD:320182 9/24 (38%)
TM helix 2 61..87 CDD:320182 11/25 (44%)
TM helix 3 99..129 CDD:320182 20/29 (69%)
TM helix 4 141..164 CDD:320182 9/22 (41%)
TM helix 5 185..214 CDD:320182 7/28 (25%)
TM helix 6 261..291 CDD:320182 12/32 (38%)
TM helix 7 299..324 CDD:320182 14/24 (58%)

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