DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Recs1 and grinab

DIOPT Version :10

Sequence 1:NP_650341.1 Gene:Recs1 / 41724 FlyBaseID:FBgn0038209 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001295540.1 Gene:grinab / 394183 ZFINID:ZDB-GENE-040426-1367 Length:337 Species:Danio rerio


Alignment Length:248 Identity:94/248 - (37%)
Similarity:145/248 - (58%) Gaps:8/248 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PLGRYTAYGSEIGQDDPDK-------GLGFCSASIRRGFIRKVYLILLAQLITSLVVIVSLTADK 80
            |.....|.|.....:||.:       ..|..:..|||.|||||:.:|..||..:...:...|.:.
Zfish    89 PFPNVVAMGEPGQSNDPPEYDSDQFTSSGLDNKEIRRVFIRKVFSVLSLQLAITTAFVAIFTFEP 153

  Fly    81 RVRLMVAESTWIFVVAILIVVFSLVALGCNEDLRRQTPANFIFLSAFTIAESFLLGVAACRYAPM 145
            .|:|.|.:::|.:.|..|:.:.....:.|..:.||:.|.|.|.||..|:|.|:::||.:..|...
Zfish   154 HVKLFVMQNSWTYWVGYLVFLVPYFVILCCGEFRRKHPWNLICLSVLTLAMSYMVGVISSFYDTD 218

  Fly   146 EIFMAVLITASVCLGLTLFALQTRYDFTVMGGLLVSCLIILLFFGIVTIFVGGHMVTTIYASLSA 210
            .:.||:.||..||..:.:|::||:||||...|:|..|.|:|..|||:.|.....::..||::|.|
Zfish   219 IVIMAIGITVVVCFTVIIFSMQTKYDFTSCYGVLFVCGIVLFVFGILCIIFYSKIMDLIYSTLGA 283

  Fly   211 LLFSVYLVYDTQLMMGGKHRYSISPEEYIFAALNIYMDVMNIFLDILQLIGGS 263
            |||:.:|..||||::|.|: .|:||||||||:||:|:|::.|||.||:::|.|
Zfish   284 LLFTCFLAVDTQLLLGNKN-LSLSPEEYIFASLNLYLDIIQIFLFILRILGRS 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Recs1NP_650341.1 LFG_like 44..261 CDD:198410 87/216 (40%)
grinabNP_001295540.1 LFG_like 119..333 CDD:198410 86/214 (40%)

Return to query results.
Submit another query.