DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Recs1 and Tmbim7

DIOPT Version :10

Sequence 1:NP_650341.1 Gene:Recs1 / 41724 FlyBaseID:FBgn0038209 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_001034701.2 Gene:Tmbim7 / 362319 RGDID:1306626 Length:303 Species:Rattus norvegicus


Alignment Length:267 Identity:111/267 - (41%)
Similarity:160/267 - (59%) Gaps:11/267 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QEP-VHQYGNRSHQAECIPLGR----YTAYGSEIGQD--DPDKGLG----FCSASIRRGFIRKVY 59
            |:| ....|:|..:|...|..|    ..||..:|.:|  .|::.:.    |.:.|||:|||.||:
  Rat    36 QQPFTSSSGDRPQEAIKYPYPRSRDGANAYAVQISEDATPPNESVNLSGPFENTSIRKGFIVKVF 100

  Fly    60 LILLAQLITSLVVIVSLTADKRVRLMVAESTWIFVVAILIVVFSLVALGCNEDLRRQTPANFIFL 124
            ::|.|||:.:..:|......:.||..:....|.....:..|:..:|.|.|..|:|||.|||:|.|
  Rat   101 VVLSAQLLITAAIISIFVFCEAVRKWIIAMPWFMYALLPAVLIVIVILACCRDIRRQVPANYILL 165

  Fly   125 SAFTIAESFLLGVAACRYAPMEIFMAVLITASVCLGLTLFALQTRYDFTVMGGLLVSCLIILLFF 189
            ..|||.|..|||..:..|...||..|...|.:|.|.||||||||::|||::.|:|.....:|:.:
  Rat   166 VFFTILEGLLLGSMSVFYKADEILWATGATTAVTLVLTLFALQTKWDFTLLNGMLFVFTSVLVIY 230

  Fly   190 GIVTIFVGGHMVTTIYASLSALLFSVYLVYDTQLMMGGKHRYSISPEEYIFAALNIYMDVMNIFL 254
            ||||:.|..:.:..:|::|..||||:|||.|.|:|:||::.|.|.||||||||||||:|::|:|:
  Rat   231 GIVTLVVRSYWLHLVYSALGTLLFSMYLVMDVQMMVGGRYHYEIDPEEYIFAALNIYVDIINLFI 295

  Fly   255 DILQLIG 261
            .||.|||
  Rat   296 FILDLIG 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Recs1NP_650341.1 LFG_like 44..261 CDD:198410 97/220 (44%)
Tmbim7NP_001034701.2 LFG_like 85..302 CDD:198410 97/216 (45%)

Return to query results.
Submit another query.