Sequence 1: | NP_001287323.1 | Gene: | RpII140 / 41721 | FlyBaseID: | FBgn0262955 | Length: | 1176 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_564341.2 | Gene: | NRPA2 / 839872 | AraportID: | AT1G29940 | Length: | 1178 | Species: | Arabidopsis thaliana |
Alignment Length: | 1274 | Identity: | 345/1274 - (27%) |
---|---|---|---|
Similarity: | 560/1274 - (43%) | Gaps: | 229/1274 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 29 IVINA----------YFDEKGLVRQQLDSFD----EFIQMSVQRIVEDSPAIELQAEAQHTSGE- 78
Fly 79 ---VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Fly 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMA 202
Fly 203 TNTVYVFSMKDGK--YAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIK 265
Fly 266 QEIPIMIVFRALGFVADRDILEHIIYDFDD-----------PEMMEMVKPSLDE----AFVVQEQ 315
Fly 316 ---NVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 377
Fly 378 LGRREL-DDRDHYGNKRLDLAGPLLAFLFRGLF-------KNLMKEVRMYT------------QK 422
Fly 423 FIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVN 487
Fly 488 SPIGRDG-KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYI-SVGSQPSPILEFLE--- 547
Fly 548 --------EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSM 604
Fly 605 IRDIRDREIRIYTDAGRICRPLLIVEN-----------GS---LLLKKTHVEMLKERDYNNYSWQ 655
Fly 656 VLVASGVVEYIDTLEEETVMIAMSPYD----LKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFP 716
Fly 717 DHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSI 781
Fly 782 VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAH 846
Fly 847 YDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVML 911
Fly 912 TLNSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAI 974
Fly 975 PSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVN-------------VQKISTFLQEYGYHLRG 1026
Fly 1027 NEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEM 1091
Fly 1092 ERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRN-------------------NTF 1137
Fly 1138 ECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVT 1176 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII140 | NP_001287323.1 | PRK08565 | 28..1176 | CDD:236291 | 345/1272 (27%) |
NRPA2 | NP_564341.2 | RpoB | 13..1174 | CDD:223163 | 342/1262 (27%) |
RNA_pol_B_RPB2 | 22..1169 | CDD:238353 | 341/1249 (27%) | ||
RNA_pol_Rpb2_2 | 202..372 | CDD:282427 | 32/187 (17%) | ||
RNA_pol_Rpa2_4 | 576..628 | CDD:284335 | 15/68 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |