Protein Alignment RpII140 and NRPD2A

DIOPT Version :9

• Sequence 1: NP_001287323.1
• Gene: RpII140 / 41721
• FlyBaseID: FBgn0262955
• Length: 1176
• Species: Drosophila melanogaster
• Sequence 2: NP_001189957.1
• Gene: NRPD2A / 821960
• AraportID: AT3G23780
• Length: 1172
• Species: Arabidopsis thaliana
• Alignment Length: 1233
• Identity: 419/1233 - (33%)
• Similarity: 625/1233 - (50%)
• Gaps: 164/1233 - (13%)

  Fly    12 EENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTS 76
            |.|..|:.....|..|.....::||:.||:..||:|::.||:..:|.:.:             :.
plant    20 EINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIEHGLQNVFQ-------------SF 71

  Fly    77 GEVETPPRF-------------SLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVD 128
            ||:...|.|             ::||.::.:.|||.: .|......:|..|||:|:||||.:.|:
plant    72 GEMLVEPSFDVVKKKDNDWRYATVKFGEVTVEKPTFF-SDDKELEFLPWHARLQNMTYSARIKVN 135

  Fly   129 I----------------TKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNE 177
            :                |...|......::.:.|...||.||:|::|..|..|: ..::..:..:
plant   136 VQVEVFKNTVVKSDKFKTGQDNYVEKKILDVKKQDILIGSIPVMVKSILCKTSE-KGKENCKKGD 199

  Fly   178 CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMA 242
            |..|.||||:|.|:|||.||||:|.|..::: |......:|::|.:.             ...:.
plant   200 CAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI-SNSPWTVSFRSENKR-------------NRFIV 250

  Fly   243 RGSQNIKKSAIGQRIIAILPY-IKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 306
            |.|:|.|.....:|...:..| :..|||:.::|.|||..:|::.::.|.:|.||..:...:..|:
plant   251 RLSENEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASI 315

  Fly   307 DEAFVVQEQ----NVALNFIGARGARPGVTKDKRIKYAK--------EILQKEMLPHVGVSDFCE 359
            ..|..|.|.    |.||.::           :::||..|        |.|...:.|  |:...
plant   316 HVADAVCEAFRCGNNALTYV-----------EQQIKSTKFPPAESVDECLHLYLFP--GLQSL-- 365

  Fly   360 TKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFI 424
            .|||.||||||..||.:..|:|:.::||.:.|||::|||.||....|....:..:::....||.:
plant   366 KKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHL 430

  Fly   425 DRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNS 488
            ....|.. :|..:..::||:||..:.:||.|....:..:..:||...|.|.....||..|||...
plant   431 SGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQ 495

  Fly   489 PIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 553
            .:...||:...|..|.:.||.:|...||:|...|||||::|:..:|..|..| ::|.|....||.
plant   496 QVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLES-VVEKLFACGMEE 559

  Fly   554 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618
            |.:...:.:....|:.:||.|||:..|.|..:|.|:..|||.: :..|:.:.||..|.|:||:||
plant   560 LMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSE-LPREMEIKRDKDDNEVRIFTD 623

  Fly   619 AGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYD- 682
            |||:.||||:|||         ::.||:...:.|.:..|:..|::|.|...|||....|.....
plant   624 AGRLLRPLLVVEN---------LQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQL 679

  Fly   683 LKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMG-KQAMGVYITNFHVRM 746
            ||:.|      .|||||:..:.:|||..:::||.:|:...|..|||... :||:|...||.::|.
plant   680 LKEPK------IYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRC 738

  Fly   747 DTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSV 811
            |||:..|:||.|||..|.:.|.|:...|..|.|:|||:..:.|||||||:::|.:::|||.|||.
plant   739 DTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSE 803

  Fly   812 FYRSY------KDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIG 870
            ..|||      ||||.::..|:...|.|.|      .:....|.|:|||....|..:|..|:|||
plant   804 QIRSYKAEVDAKDSEKRKKMDELVQFGKTH------SKIGKVDSLEDDGFPFIGANMSTGDIVIG 862

  Fly   871 KTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGD 935
            :...               |..|.|..|:::|.|||.:|:|:.|.||..|..:.:|.||.|.:||
plant   863 RCTE---------------SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGD 912

  Fly   936 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIE--------CLQGKLG 992
            ||:|.|||||..|....|::..||.:|:.|||:|||||.|||.|.|.|:|        |...|.|
plant   913 KFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEG 977

  Fly   993 SNKGE---IGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLK 1054
            |:...   ...||||: ...|.:|:..|...|:...|||.:|||.:|..:.:.:|:|||:||||.
plant   978 SSAAYTKLTRHATPFS-TPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLV 1041

  Fly  1055 HMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVH 1119
            ||.:||:..|..|||..|.|||:..|.|.||::||||||||.|:|||:..|.||||.:||..::|
plant  1042 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMH 1106

  Fly  1120 ICNFCGLIAIANLRNNTFE-------------CKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169
            ||..|...|      |..|             |:.|.:...:.:|.:||.||||.|||.||.|
plant  1107 ICRKCKTYA------NVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGI 1163

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII140	NP_001287323.1	PRK08565	28..1176	CDD:236291	414/1217 (34%)
NRPD2A	NP_001189957.1	RNA_pol_B_RPB2	48..1168	CDD:238353	411/1205 (34%)
		RNA_pol_Rpb2_4	574..635	CDD:398322	28/61 (46%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0085
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D42570at2759
OrthoFinder	1	1.000	-	-		FOG0000346
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100190
Panther	1	1.100	-	-	O	PTHR20856
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	7	6.780