Sequence 1: | NP_001287323.1 | Gene: | RpII140 / 41721 | FlyBaseID: | FBgn0262955 | Length: | 1176 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
Alignment Length: | 1160 | Identity: | 427/1160 - (36%) |
---|---|---|---|
Similarity: | 669/1160 - (57%) | Gaps: | 72/1160 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQI 92
Fly 93 YLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIML 157
Fly 158 RSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEI 222
Fly 223 RSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 287
Fly 288 HIIYDFDDPEMMEMVKPSLDEAF--VVQEQNVALNFIGA----RGARPGVTKDKRIKYAKEILQK 346
Fly 347 EMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKN 411
Fly 412 LMKEVRMYTQKFIDRGK--DFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRL 474
Fly 475 TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQP 539
Fly 540 SPILEFLEEWSMENLEEIAPSAI--ADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEV 602
Fly 603 SMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEY 665
Fly 666 IDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM 730
Fly 731 GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 795
Fly 796 VILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGI 860
Fly 861 RVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRV 925
Fly 926 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
Fly 991 LGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKH 1055
Fly 1056 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHI 1120
Fly 1121 CNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII140 | NP_001287323.1 | PRK08565 | 28..1176 | CDD:236291 | 427/1160 (37%) |
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 427/1160 (37%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 423/1145 (37%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 51/178 (29%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 23/61 (38%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 14/52 (27%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45448991 | |
Domainoid | 1 | 1.000 | 152 | 1.000 | Domainoid score | I186 |
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 253 | 1.000 | Inparanoid score | I120 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | otm51329 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100190 | |
Panther | 1 | 1.100 | - | - | P | PTHR20856 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X610 | |
11 | 10.800 |