DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII140 and RpIII128

DIOPT Version :9

Sequence 1:NP_001287323.1 Gene:RpII140 / 41721 FlyBaseID:FBgn0262955 Length:1176 Species:Drosophila melanogaster
Sequence 2:NP_523706.1 Gene:RpIII128 / 36289 FlyBaseID:FBgn0004463 Length:1137 Species:Drosophila melanogaster


Alignment Length:1160 Identity:427/1160 - (36%)
Similarity:669/1160 - (57%) Gaps:72/1160 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQI 92
            |.::.|:...||||:|.:|||:.||.:.:::||:.:..:        |||   ..|.|.||:..:
  Fly    35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELV--------TSG---ADPLFYLKYLDV 88

  Fly    93 YLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIML 157
            .:.||...:.........|:|.|||:.|||||:.|||..|:..:.:     :.....||::|:||
  Fly    89 RVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRI-----KRNNLLIGRMPLML 148

  Fly   158 RSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEI 222
            |.:.|.|:..::.:|::||||||||||||::.|.|||::.||:::.|.:..   :|.....:.::
  Fly   149 RCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLT---EDFNGVVQCQV 210

  Fly   223 RSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 287
            .|........|..|    ...|...:|.::           :..:|||:::|:|||.|:|::|..
  Fly   211 TSSTHEKKSRTLVL----SKHGKYYLKHNS-----------MTDDIPIVVIFKALGVVSDQEIQS 260

  Fly   288 HIIYDFDDPEMMEMVKPSLDEAF--VVQEQNVALNFIGA----RGARPGVTKDKRIKYAKEILQK 346
            .|..   |.:.......||.:|:  .|..|..||.::|:    :..:...||... :.|:|:|..
  Fly   261 LIGI---DSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPS-EEARELLLT 321

  Fly   347 EMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKN 411
            .:|.||.|.:|....||.::..||.|::.|.|.:...||||:||||||:|||.||:.:|..|||.
  Fly   322 TILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKR 386

  Fly   412 LMKEVRMYTQKFIDRGK--DFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRL 474
            :..|::....|.|.:.|  .|::...::...||.||..::::||| ..|:....||||:|||:||
  Fly   387 MNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNW-TIKRFKMERAGVTQVLSRL 450

  Fly   475 TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQP 539
            ::.|.|..:.||||...:..|::.||.|..:.||||||::||||.|.|||||||||.:|:...:.
  Fly   451 SYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEE 515

  Fly   540 SPILEFLEEWSMENLEEIAPSAI--ADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEV 602
            .|::.......:|::.|::.:.|  .:...:|:||..:|:..:.:.|:..||.:||: ..:.|.|
  Fly   516 RPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRK-GRMGSYV 579

  Fly   603 SMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEY 665
            |:......|.|.|:||.||:|||.:||||...|:|:.|::.|..  |.::::     :..|::||
  Fly   580 SVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDF-----LLDGLIEY 639

  Fly   666 IDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM 730
            :|..||....||.:. |..:|:.       ||.||.|..:|||||.::|:|.||||||||||.||
  Fly   640 LDVNEENDSFIAWNE-DQIEDRT-------THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM 696

  Fly   731 GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 795
            ||||||:...|...|:|:|.:.|.||..|:|.::::|...|.:||||.|:.||::.|:||:.||:
  Fly   697 GKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDA 761

  Fly   796 VILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGI 860
            :|||.::::||:.|.:.|::.|.:..:......:....|.:..........:|.||.|||:|||.
  Fly   762 LILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGE 826

  Fly   861 RVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRV 925
            :|....::|.|.:....:.:.|...:.:..........:..|...:::||::.|:|.....||.:
  Fly   827 QVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILL 891

  Fly   926 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
            |..|||:|||||:|||||||..|:...||||.|...|:.||:|:|||..|||||:|..:|.|.||
  Fly   892 RQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGK 956

  Fly   991 LGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKH 1055
            .|..:|:....|.|..: .|:.|...|:.:|::..|.:..|:|.||..:.|.::.||.|||:|||
  Fly   957 AGLLEGKFHYGTAFGGS-KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKH 1020

  Fly  1056 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHI 1120
            ||.||:|:|||||..:|.|||.:||:|:||||.|||||||.||:||:..:.|||...||.:.|.:
  Fly  1021 MVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDV 1085

  Fly  1121 CNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175
            |..||.:|..:.      |..|::...:|::.:|||.|||||||.|||:.|::::
  Fly  1086 CRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMIL 1134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII140NP_001287323.1 PRK08565 28..1176 CDD:236291 427/1160 (37%)
RpIII128NP_523706.1 PRK08565 34..1135 CDD:236291 427/1160 (37%)
RNA_pol_B_RPB2 47..1133 CDD:238353 423/1145 (37%)
RNA_pol_Rpb2_2 210..370 CDD:282427 51/178 (29%)
RNA_pol_Rpb2_4 546..607 CDD:282431 23/61 (38%)
RNA_pol_Rpb2_5 628..668 CDD:282432 14/52 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45448991
Domainoid 1 1.000 152 1.000 Domainoid score I186
eggNOG 1 0.900 - - E1_COG0085
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 253 1.000 Inparanoid score I120
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D42570at2759
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 1 1.000 - - otm51329
orthoMCL 1 0.900 - - OOG6_100190
Panther 1 1.100 - - P PTHR20856
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X610
1110.800

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