DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII140 and RpI135

DIOPT Version :9

Sequence 1:NP_001287323.1 Gene:RpII140 / 41721 FlyBaseID:FBgn0262955 Length:1176 Species:Drosophila melanogaster
Sequence 2:NP_476708.1 Gene:RpI135 / 33210 FlyBaseID:FBgn0003278 Length:1129 Species:Drosophila melanogaster


Alignment Length:1234 Identity:340/1234 - (27%)
Similarity:548/1234 - (44%) Gaps:256/1234 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 LDSFDEFIQMSVQRIVEDSPAIELQAEAQH--------TSGEVETPPRFSLKFEQIYLSKPTHWE 101
            :|||||.:            .:.|...|:|        .:||     :.|:|.|.|:::||...:
  Fly    40 VDSFDEML------------TVGLDNSAKHMIPNHWLSPAGE-----KISMKVESIWIAKPKVPQ 87

  Fly   102 K--DGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLL 164
            .  |.....:.|.::|..:::||....|.:..:.|.....|:...     :|::||||||..|.|
  Fly    88 DVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMD-----LGEVPIMLRSKACNL 147

  Fly   165 SQLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAFKTEIRSCL 226
            .|.|..::.:..|...:.||.|:|.|:||:   ||...:.....|...|.||....| :::...:
  Fly   148 GQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNF-SDLGMLV 211

  Fly   227 EHSSRPTSTL--WVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 289
            :......|:|  .|:.:..|:.....|.:.:     |.|    :|:.::.:.|....|.:|...:
  Fly   212 QTVREDESSLSNVVHYLNNGTAKFMFSHVKR-----LSY----VPVCLILKCLMDYTDEEIYNRL 267

  Fly   290 IYDFD-DPEMMEMVKPSLDEAFVVQEQNV-----ALNFIG--ARGARPGVTK---DKRIKYAKEI 343
            :..:: |...:..|:..|.|   ||.:||     ..:|||  .|...|.|.:   |..:  ...|
  Fly   268 VQGYESDQYYVSCVQAMLRE---VQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDV--TDFI 327

  Fly   344 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 408
            |::.::.|:...:    .|...:.:|:.:|...:.|:.::::.|....:.:.|.|.|........
  Fly   328 LRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388

  Fly   409 FKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYS----------LATGNWGDQKKAHQA 463
            .::.:.:||...||     |..:.:..:.:.::|..:|.:          |||||..       :
  Fly   389 VESWVSQVRRCLQK-----KLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIA-------S 441

  Fly   464 RAG-----------VSQVLNRLTFASTLSHLRRVNSPIGRDG-----KLAKPRQLHNTLWGMLCP 512
            |.|           :::.:||:.:   :||.|.::    |..     :..:.|||....||.:||
  Fly   442 RTGLGLMQNSGLVIMAENINRMRY---MSHFRAIH----RGSYFTTMRTTEARQLLPDAWGFICP 499

  Fly   513 AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATK---------- 567
            ..||:|...||:.:|.|...||:  :|.|           .|.:..|..:.|...          
  Fly   500 VHTPDGTPCGLLNHLTLTCEISM--RPDP-----------KLVKAIPKHLIDMGMMPLSNRRYLG 551

  Fly   568 -----IFVNGCWVG-IHR-DPEQLMATLR------KLRRQMDIIVSEVSMIRDIRDREIRIYTDA 619
                 :|::|..:| ||: :.|:::..||      .|.:.|:|  ..:...::.:...:.|.|..
  Fly   552 EKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEI--GFIPFKKNGQFPGLYIATGP 614

  Fly   620 GRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLK 684
            .|:.||:.                       |..|:      .||||.|||:..:.||:   |.|
  Fly   615 ARMMRPVW-----------------------NLKWK------RVEYIGTLEQLYMEIAI---DAK 647

  Fly   685 QDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTL 749
            :    .|....||.|:.....:...|::||.||:||||||.||..||||.||....|:..:....
  Fly   648 E----MYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANK 708

  Fly   750 AHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF-FRSVFY 813
            .:.|..|..||......:.::..:...|.|:|||::.||||:.||::|:|.:|.|||| :.|::.
  Fly   709 LYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYK 773

  Fly   814 RSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDK----LDDDGIIAPGIRVS---------GD 865
            ..:...:.|               :....|:.|..:    ||.||:..||.::|         ..
  Fly   774 TKFLTLDKK---------------SSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDG 823

  Fly   866 DVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRI 930
            :|...|.:.:.|.:|.:..:.::....|.|.                     .|...|.:|..|.
  Fly   824 EVATYKVVKMDEKEDCIVESIRQLGSFDLSP---------------------KKMVAITLRVPRP 867

  Fly   931 PQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
            ..||||||||.||||.|..:|..||:.||..||.|||:.|||..||||||..:||.:.||..:..
  Fly   868 ATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIH 932

  Fly   996 GEIGDATPF-----NDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKH 1055
            |.:.|||||     |.|::.  ....|:..||:..|.|.:|:|..||::.|.:|.|..:||||:|
  Fly   933 GNVYDATPFRFSEENTAIDY--FGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRH 995

  Fly  1056 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHI 1120
            ||.||...|:.|.|:....||::||.|.||:||||||||..||||||..|::|||..||.....:
  Fly   996 MVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLV 1060

  Fly  1121 CNFCGLIAIANL-----RNNT-------FECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPR 1172
            |:.||.| :|.|     ||.|       ..|:.|.:.:.:|.:.:|::.|.|..||.|:||..|
  Fly  1061 CHKCGSI-LAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII140NP_001287323.1 PRK08565 28..1176 CDD:236291 340/1234 (28%)
RpI135NP_476708.1 RpoB 34..1128 CDD:223163 340/1234 (28%)
RNA_pol_B_RPB2 35..1125 CDD:238353 340/1234 (28%)
RNA_pol_Rpa2_4 564..614 CDD:284335 11/51 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45448989
Domainoid 1 1.000 152 1.000 Domainoid score I186
eggNOG 1 0.900 - - E1_COG0085
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D42570at2759
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 1 1.000 - - otm51329
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR20856
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.850

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