Sequence 1: | NP_001287323.1 | Gene: | RpII140 / 41721 | FlyBaseID: | FBgn0262955 | Length: | 1176 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_476708.1 | Gene: | RpI135 / 33210 | FlyBaseID: | FBgn0003278 | Length: | 1129 | Species: | Drosophila melanogaster |
Alignment Length: | 1234 | Identity: | 340/1234 - (27%) |
---|---|---|---|
Similarity: | 548/1234 - (44%) | Gaps: | 256/1234 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 45 LDSFDEFIQMSVQRIVEDSPAIELQAEAQH--------TSGEVETPPRFSLKFEQIYLSKPTHWE 101
Fly 102 K--DGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLL 164
Fly 165 SQLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAFKTEIRSCL 226
Fly 227 EHSSRPTSTL--WVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 289
Fly 290 IYDFD-DPEMMEMVKPSLDEAFVVQEQNV-----ALNFIG--ARGARPGVTK---DKRIKYAKEI 343
Fly 344 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 408
Fly 409 FKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYS----------LATGNWGDQKKAHQA 463
Fly 464 RAG-----------VSQVLNRLTFASTLSHLRRVNSPIGRDG-----KLAKPRQLHNTLWGMLCP 512
Fly 513 AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATK---------- 567
Fly 568 -----IFVNGCWVG-IHR-DPEQLMATLR------KLRRQMDIIVSEVSMIRDIRDREIRIYTDA 619
Fly 620 GRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLK 684
Fly 685 QDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTL 749
Fly 750 AHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF-FRSVFY 813
Fly 814 RSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDK----LDDDGIIAPGIRVS---------GD 865
Fly 866 DVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRI 930
Fly 931 PQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNK 995
Fly 996 GEIGDATPF-----NDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKH 1055
Fly 1056 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHI 1120
Fly 1121 CNFCGLIAIANL-----RNNT-------FECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPR 1172 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII140 | NP_001287323.1 | PRK08565 | 28..1176 | CDD:236291 | 340/1234 (28%) |
RpI135 | NP_476708.1 | RpoB | 34..1128 | CDD:223163 | 340/1234 (28%) |
RNA_pol_B_RPB2 | 35..1125 | CDD:238353 | 340/1234 (28%) | ||
RNA_pol_Rpa2_4 | 564..614 | CDD:284335 | 11/51 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45448989 | |
Domainoid | 1 | 1.000 | 152 | 1.000 | Domainoid score | I186 |
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | otm51329 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR20856 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
8 | 7.850 |