Sequence 1: | NP_001287323.1 | Gene: | RpII140 / 41721 | FlyBaseID: | FBgn0262955 | Length: | 1176 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_956812.2 | Gene: | polr1b / 325603 | ZFINID: | ZDB-GENE-040426-1598 | Length: | 1132 | Species: | Danio rerio |
Alignment Length: | 1227 | Identity: | 355/1227 - (28%) |
---|---|---|---|
Similarity: | 529/1227 - (43%) | Gaps: | 223/1227 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDG 104
Fly 105 SPSPM--MPNEARLRNLTYSAPLYVDITKTKN--VEGLDPVETQHQKTFIGKIPIMLRSTYCLLS 165
Fly 166 QLTDRDLTELNECPLDPGGYFIINGSEKVL-------------IAQEKMATN----TVYVFSMKD 213
Fly 214 GKYAFKTEIRSCL--EHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRA 276
Fly 277 LGFVADRDILEHIIYDFDDPEM-MEMVKPSLDEAF----------VVQEQNV-----ALNFIGAR 325
Fly 326 GARPGVTKDKRIKY-AKEILQKEMLPHVGVSDFC-------ETKKAYFLGYMVHRLLLASLGRRE 382
Fly 383 L--DDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR---------GKDFNLELAI 436
Fly 437 KTNIITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAK-- 498
Fly 499 ---PRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP- 559
Fly 560 SAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICR 624
Fly 625 PLLIVENG------SLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDL 683
Fly 684 KQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 748
Fly 749 LAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR-SVF 812
Fly 813 YRSYKDSENKRVGDQEENF-EKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLP 876
Fly 877 ENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEG---YKFCKIRVRSVRIPQIGDKFA 938
Fly 939 SRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003
Fly 1004 F-----NDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063
Fly 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIA 1128
Fly 1129 IANL----------RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII140 | NP_001287323.1 | PRK08565 | 28..1176 | CDD:236291 | 355/1227 (29%) |
polr1b | NP_956812.2 | RpoB | 16..1132 | CDD:223163 | 355/1227 (29%) |
RNA_pol_B_RPB2 | 37..1130 | CDD:238353 | 353/1224 (29%) | ||
RNA_pol_Rpa2_4 | 561..614 | CDD:284335 | 10/70 (14%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |