DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII140 and polr1b

DIOPT Version :9

Sequence 1:NP_001287323.1 Gene:RpII140 / 41721 FlyBaseID:FBgn0262955 Length:1176 Species:Drosophila melanogaster
Sequence 2:NP_956812.2 Gene:polr1b / 325603 ZFINID:ZDB-GENE-040426-1598 Length:1132 Species:Danio rerio


Alignment Length:1227 Identity:355/1227 - (28%)
Similarity:529/1227 - (43%) Gaps:223/1227 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDG 104
            ||:..::|||:.:...:.|:||..|.:|...:..          |.||.|.:..:..|: ..|.|
Zfish    37 LVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGD----------RISLSFVEAIIHTPS-VSKGG 90

  Fly   105 SPSPM--MPNEARLRNLTYSAPLYVDITKTKN--VEGLDPVETQHQKTFIGKIPIMLRSTYCLLS 165
            ....:  .|.|.|.|..||.|.|..|::.:.|  .:|:       .|..:|::|||::|..|.|.
Zfish    91 ISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGI-------IKQSLGQMPIMVKSKLCNLH 148

  Fly   166 QLTDRDLTELNECPLDPGGYFIINGSEKVL-------------IAQEKMATN----TVYVFSMKD 213
            .|:.::|.|.:|...:.|||||:||.|||:             :::.|..:.    |.|..||: 
Zfish   149 GLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAISMR- 212

  Fly   214 GKYAFKTEIRSCL--EHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRA 276
                       |:  ||::       :||      |:.....|..::..: |.|:     :.|..
Zfish   213 -----------CVKEEHTA-------INM------NLHYLDNGTVMVNFI-YRKE-----LFFLP 247

  Fly   277 LGFVADRDILEHIIYDFDDPEM-MEMVKPSLDEAF----------VVQEQNV-----ALNFIGAR 325
            |||.     |:.:: |:.|.:: .|::|...|.:|          :|.:|..     .||::|.|
Zfish   248 LGFA-----LKALV-DYSDYQIYQELIKGREDNSFYKSCVSEMLRIVMDQGCTTKIKVLNYLGER 306

  Fly   326 GARPGVTKDKRIKY-AKEILQKEMLPHVGVSDFC-------ETKKAYFLGYMVHRLLLASLGRRE 382
                     .|:|. ..|....|...|. :.|.|       :.:|.|.|..|..:|.  |..::|
Zfish   307 ---------FRVKLNLPEWFTHEQCAHF-LLDECLCIHLKTDVEKFYMLCLMTRKLF--SFAKQE 359

  Fly   383 L--DDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR---------GKDFNLELAI 436
            .  ::.|......:...|.|.....:...:..:..|::..:|...|         .|.||:    
Zfish   360 CMEENPDSPMFHEVLTPGQLYLMFLKEKMEGWLVSVKLALEKKPQRVGGLTPDSMTKLFNM---- 420

  Fly   437 KTNIITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAK-- 498
             ...:|....|.|||||...:......: :|:..|.::|.|...|||.|.|:    |....||  
Zfish   421 -GTDLTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVH----RGAAFAKMR 480

  Fly   499 ---PRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP- 559
               .|:|....||.|||..||:|...||:.::.....|.....|:..|..|......|..:..| 
Zfish   481 TTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADGNPG 545

  Fly   560 SAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICR 624
            .|.:|...:.::|..:| ..:.|...:.:..|||           .:.:.::::..:|:.     
Zfish   546 QAYSDCYPVILDGAMIG-WVEKEVAPSVIESLRR-----------FKVLGEKKVPPWTEI----- 593

  Fly   625 PLLIVENG------SLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDL 683
             :|:.:.|      .|.|..|...|:  |...|.|      .|..|.|...|:..:.:.:...::
Zfish   594 -VLVPQTGKASLYPGLYLFTTPCRMV--RTVRNLS------LGKQELIGIFEQVYLNVGIFEKEI 649

  Fly   684 KQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDT 748
            :..       ..||.|:.|..:|.|.|..|||.||||||||.||..|.||.||..:.::..|.|.
Zfish   650 EDG-------VTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDN 707

  Fly   749 LAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR-SVF 812
            ..:.|..|..|||.....::......|.|.|:|||::.||||:.||::|:|.|:.||||.. ||:
Zfish   708 KLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVY 772

  Fly   813 YRSYKDSENKRVGDQEENF-EKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLP 876
            .....|...|..||....| .||......|       |||.||:...|..:...|...| .|:|.
Zfish   773 KTEIIDLSEKVKGDDSIVFGVKPGDPKVMG-------KLDADGLPFIGSVLKYGDPFYG-YISLN 829

  Fly   877 ENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEG---YKFCKIRVRSVRIPQIGDKFA 938
            .....:             .|.:..|:.:||.:.:..|..|   :|...:..|..|.|.||||||
Zfish   830 TGQSHV-------------YFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFA 881

  Fly   939 SRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATP 1003
            |||||||.....:..|||.||..|::|||:.|||..|||||||.|||.:.||..|..|...||||
Zfish   882 SRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATP 946

  Fly  1004 F-----NDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063
            |     |.|  ::.....|:..||:..|.|.:|:|.:|.::.|.:|:|..|||||:|||.||...
Zfish   947 FTFSEENSA--LEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQV 1009

  Fly  1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIA 1128
            |..|....:..|||.||...||:||||||||..::||.:..|.:|||..||.....:|..||.:.
Zfish  1010 RTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLL 1074

  Fly  1129 IANL----------RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175
            ...|          |:....|..|.....|..|.:||..|....||.:|||..:|.|
Zfish  1075 STLLEKPPPNWSATRHRKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKLDV 1131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII140NP_001287323.1 PRK08565 28..1176 CDD:236291 355/1227 (29%)
polr1bNP_956812.2 RpoB 16..1132 CDD:223163 355/1227 (29%)
RNA_pol_B_RPB2 37..1130 CDD:238353 353/1224 (29%)
RNA_pol_Rpa2_4 561..614 CDD:284335 10/70 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0085
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D42570at2759
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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