DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII140 and rpb2

DIOPT Version :9

Sequence 1:NP_001287323.1 Gene:RpII140 / 41721 FlyBaseID:FBgn0262955 Length:1176 Species:Drosophila melanogaster
Sequence 2:NP_593101.2 Gene:rpb2 / 2541446 PomBaseID:SPAC23G3.01 Length:1210 Species:Schizosaccharomyces pombe


Alignment Length:1213 Identity:733/1213 - (60%)
Similarity:922/1213 - (76%) Gaps:60/1213 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 YEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQH 74
            ||:....|   .|.||.||.||:::|:|..|.||||.|||||:|.::|.||:|...:.|...|||
pombe     3 YEDYQYNE---TLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQH 64

  Fly    75 TSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEG-- 137
            |..:.:...|:.:.|.|||||:||..|.|||.:.|.|.||||||||||:|||||:.|...|..  
pombe    65 TGAQGDVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADS 129

  Fly   138 ----------LDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192
                      ::..:.:..|.||||||||||||:|:|:.::|.:|.:|||||.|.||||||||||
pombe   130 NVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSE 194

  Fly   193 KVLIAQEKMATNTVYVF-SMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQR 256
            ||:||||:.|.|.|.|| .......|:..||||.||..||..|::.:.:|||.::|     .||.
pombe   195 KVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTEN-----SGQT 254

  Fly   257 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
            |.|.||||:.:|||:|||||||.|.||||||||.||.:|.:|:||:||.::||||:|::::||::
pombe   255 IRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDKDIALDY 319

  Fly   322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
            ||.||:..|||::||::||.:|||||:|||:...:..||:||:|||||:||:||.:|.|||.|||
pombe   320 IGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDR 384

  Fly   387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLAT 451
            ||:|.|||||||||||.|||.||:.:.::|..|.||.::..::|||.||:|:||||:||||||||
pombe   385 DHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLAT 449

  Fly   452 GNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETP 516
            |||||||::...|.||||||||.|||||||||||.|:|||||||||||||||||.|||:||||||
pombe   450 GNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETP 514

  Fly   517 EGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 581
            ||.|.||||||:||:|:||||..:||:||||||.:|.||:..|||..:|||:||||.|:|:||||
pombe   515 EGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDP 579

  Fly   582 EQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEN-------GSLLLKKT 639
            ..|..|||.|||::| |.:|||::||||::|:|::||||||||||.||:|       |.|.::|.
pombe   580 AHLTETLRSLRRRLD-ISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKE 643

  Fly   640 HVEMLKERDYNNY--------SWQVLVASGVVEYIDTLEEETVMIAMSP------------YDLK 684
            |::.|.| |.:.|        .|..||:||::||:|..|||||||||||            |::|
pombe   644 HIQQLIE-DKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVK 707

  Fly   685 QDKDYA---------YCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 740
            ::.|.|         :...:||||||||||||:.|||||||||||||||||||||||||||||:|
pombe   708 EELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLT 772

  Fly   741 NFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVER 805
            |:.|||||:|::||||.|||.||||||||:|||||||.|:|||||||:|||||||:|:|.::::|
pombe   773 NYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDR 837

  Fly   806 GFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIG 870
            |.|||:|||:|.|.|.|......|.||:|.|.|...|::..||||:|||:||||.||||:|::||
pombe   838 GLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIG 902

  Fly   871 KTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGD 935
            ||..:|.:.:||...|:..:|||.||.||::|:|||||||:|.|.||.||.|:|:||.|||||||
pombe   903 KTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGD 967

  Fly   936 KFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGD 1000
            |||||||||||.|:.||.|||.|:.:|:.|||||||||||||||:.||:||...|:.:..|..||
pombe   968 KFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGD 1032

  Fly  1001 ATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 1065
            ||||.| |.|:.:|..|:.:|:..||.||||:||||||:.|||||||||||||||:||||||:||
pombe  1033 ATPFTD-VTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARA 1096

  Fly  1066 RGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIA 1130
            |||||||.|||:|||:|||||||||||||||||||.:..||||||:.||.|||.:|:.|||||||
pombe  1097 RGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIA 1161

  Fly  1131 NLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1173
            :.:.:::||:.|:|:|:.|||.|||||||||||||||||||||
pombe  1162 SYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRL 1204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII140NP_001287323.1 PRK08565 28..1176 CDD:236291 726/1195 (61%)
rpb2NP_593101.2 RNA_pol_Rpb2_7 18..1204 CDD:331952 724/1193 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 523 1.000 Domainoid score I46
eggNOG 1 0.900 - - E1_COG0085
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H722
Inparanoid 1 1.050 1457 1.000 Inparanoid score I12
OMA 1 1.010 - - QHG62192
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 1 1.000 - - oto100512
orthoMCL 1 0.900 - - OOG6_100190
Panther 1 1.100 - - LDO PTHR20856
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1184
SonicParanoid 1 1.000 - - X610
TreeFam 1 0.960 - -
1413.860

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