DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII140 and Polr1b

DIOPT Version :9

Sequence 1:NP_001287323.1 Gene:RpII140 / 41721 FlyBaseID:FBgn0262955 Length:1176 Species:Drosophila melanogaster
Sequence 2:NP_033112.2 Gene:Polr1b / 20017 MGIID:108014 Length:1135 Species:Mus musculus


Alignment Length:1232 Identity:358/1232 - (29%)
Similarity:539/1232 - (43%) Gaps:231/1232 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWE--- 101
            |.|..:|||:......:...|:..|..|...:.:          |.||......:|.|:..:   
Mouse    38 LTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDE----------RISLTIVDAVISPPSVPKGTI 92

  Fly   102 -KDGSPSPMMPNEARLRNLTYSAPLYVDITKTKN--VEGLDPVETQHQKTFIGKIPIMLRSTYCL 163
             ||.:   :.|.|.|.|..||...|..||:...|  .:|:       .|.|:|.:|||::|..|.
Mouse    93 CKDLN---VYPAECRGRKSTYRGRLTADISWAVNGVPKGI-------IKQFLGYVPIMVKSKLCN 147

  Fly   164 LSQLTDRDLTELNECPLDPGGYFIINGSEKVL-------------IAQEKMATNTVYVFSMKDGK 215
            |..|..|.|.|.:|...:.||||||||.|||:             :.:.|..:..:       |.
Mouse   148 LYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGL-------GY 205

  Fly   216 YAFKTEIRSCL--EHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQ--EIPIMIVFRA 276
            ..|...:| |:  |||:       |||.....:|      |..::..: |.|:  .:|:....:|
Mouse   206 TQFGVSMR-CVREEHSA-------VNMNLHYVEN------GTVMLNFI-YRKELFFLPLGFALKA 255

  Fly   277 LGFVADRDILEHIIY-----DFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKR 336
            |...:|..|.:.:|.     .|....:.:|::..::|....|:|  .||::|         :..|
Mouse   256 LVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQ--VLNYLG---------ECFR 309

  Fly   337 IKYAKEILQKEMLPHVGVSDF------C-----ETKKAYFLGYMVHRLLLASLGRRELDDRDHYG 390
            :|    :...:..|:|..::|      |     .|.|.|.|..|..:|...:.|....|:.|...
Mouse   310 VK----LSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLV 370

  Fly   391 NKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGK-DFNLELAIKT----NIITDGLRYSLA 450
            |:.:...|.|.....:...:|.:..:::...|...:.. ..|.|..:|.    ..:|....|.||
Mouse   371 NQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLLA 435

  Fly   451 TGNWGDQK-KAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAK-----PRQLHNTLWGM 509
            |||...:. ......:|:..|.::|.|...|||.|.|:    |....||     .|:|....||.
Mouse   436 TGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVH----RGAAFAKMRTTTVRRLLPESWGF 496

  Fly   510 LCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL--------EEIAP-SAIADA 565
            |||..||:||..||:.:|..:..:        :.:|:...|:..|        .:.|| ...:|.
Mouse   497 LCPVHTPDGAPCGLLNHLTAVCEV--------VTKFVYTASIPALLCGLGVTPVDTAPCRPYSDC 553

  Fly   566 TKIFVNGCWVG-IHRD--PEQLMATLRK---LRRQMDIIVSEVSMI----RDIRDREIRIYTDAG 620
            ..:.::|..|| :.:|  || :..|||:   ||.:......||::|    :......:.::|...
Mouse   554 YPVLLDGVMVGWVDKDLAPE-VADTLRRFKVLREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPC 617

  Fly   621 RICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQ 685
            |:.||   |:|         :|:.:|                 |.|.|:|:..:.:|:.      
Mouse   618 RLVRP---VQN---------LELGRE-----------------ELIGTMEQLFMNVAIF------ 647

  Fly   686 DKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLA 750
             :|..:....||.|:.|..:|.|.|:.|||.||||||||.||..||||.||..:..:..|.|...
Mouse   648 -EDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKL 711

  Fly   751 HVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRS 815
            :.|..|..|||.....::......|.|.|:|||::.||||:.||::|:|.::.||||.....|:|
Mouse   712 YRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS 776

  Fly   816 YKDSENKRVGDQEENFEKPHRGTCQGMRNAH---YDKLDDDGIIAPGIRVSGDDVVIGKTITLPE 877
                   ...|..|.|::.......|::...   ..||||||                    ||.
Mouse   777 -------EFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDG--------------------LPF 814

  Fly   878 NDDELDSNTKRFSKRDAST------FLRNSETGIVDQVMLTLNSEG---YKFCKIRVRSVRIPQI 933
            ...:|:.....:|..:.:|      :.::.|..:||.:.:..|..|   :|...|.||..|.|.|
Mouse   815 IGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTI 879

  Fly   934 GDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEI 998
            ||||||||||||.....:..|||.||..|:.|||:.|||..|||||||.|||.:.||..:..|..
Mouse   880 GDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLC 944

  Fly   999 GDATPF-----NDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 1058
            .|||||     |.|  ::.....|:..||:..|.|.:|:|.:|.::.|.:|:|..|||||:|||.
Mouse   945 HDATPFIFSEENSA--LEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVS 1007

  Fly  1059 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123
            ||...|..|....:..||:.||...||:||||||||..::||.:..|.:|||..||....|:|..
Mouse  1008 DKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVE 1072

  Fly  1124 CGLI----------AIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175
            ||.:          :.:.:||..:.|..|.....|..|.:||..:....||.:|||..:|.|
Mouse  1073 CGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII140NP_001287323.1 PRK08565 28..1176 CDD:236291 358/1232 (29%)
Polr1bNP_033112.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
RpoB 35..1134 CDD:223163 357/1230 (29%)
RNA_pol_B_RPB2 38..1133 CDD:238353 356/1229 (29%)
RNA_pol_Rpb2_2 186..375 CDD:282427 45/225 (20%)
RNA_pol_Rpa2_4 563..616 CDD:284335 14/53 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0085
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000346
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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