Sequence 1: | NP_001287323.1 | Gene: | RpII140 / 41721 | FlyBaseID: | FBgn0262955 | Length: | 1176 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_033112.2 | Gene: | Polr1b / 20017 | MGIID: | 108014 | Length: | 1135 | Species: | Mus musculus |
Alignment Length: | 1232 | Identity: | 358/1232 - (29%) |
---|---|---|---|
Similarity: | 539/1232 - (43%) | Gaps: | 231/1232 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWE--- 101
Fly 102 -KDGSPSPMMPNEARLRNLTYSAPLYVDITKTKN--VEGLDPVETQHQKTFIGKIPIMLRSTYCL 163
Fly 164 LSQLTDRDLTELNECPLDPGGYFIINGSEKVL-------------IAQEKMATNTVYVFSMKDGK 215
Fly 216 YAFKTEIRSCL--EHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQ--EIPIMIVFRA 276
Fly 277 LGFVADRDILEHIIY-----DFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKR 336
Fly 337 IKYAKEILQKEMLPHVGVSDF------C-----ETKKAYFLGYMVHRLLLASLGRRELDDRDHYG 390
Fly 391 NKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGK-DFNLELAIKT----NIITDGLRYSLA 450
Fly 451 TGNWGDQK-KAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAK-----PRQLHNTLWGM 509
Fly 510 LCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL--------EEIAP-SAIADA 565
Fly 566 TKIFVNGCWVG-IHRD--PEQLMATLRK---LRRQMDIIVSEVSMI----RDIRDREIRIYTDAG 620
Fly 621 RICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQ 685
Fly 686 DKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLA 750
Fly 751 HVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRS 815
Fly 816 YKDSENKRVGDQEENFEKPHRGTCQGMRNAH---YDKLDDDGIIAPGIRVSGDDVVIGKTITLPE 877
Fly 878 NDDELDSNTKRFSKRDAST------FLRNSETGIVDQVMLTLNSEG---YKFCKIRVRSVRIPQI 933
Fly 934 GDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEI 998
Fly 999 GDATPF-----NDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 1058
Fly 1059 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNF 1123
Fly 1124 CGLI----------AIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpII140 | NP_001287323.1 | PRK08565 | 28..1176 | CDD:236291 | 358/1232 (29%) |
Polr1b | NP_033112.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..26 | ||
RpoB | 35..1134 | CDD:223163 | 357/1230 (29%) | ||
RNA_pol_B_RPB2 | 38..1133 | CDD:238353 | 356/1229 (29%) | ||
RNA_pol_Rpb2_2 | 186..375 | CDD:282427 | 45/225 (20%) | ||
RNA_pol_Rpa2_4 | 563..616 | CDD:284335 | 14/53 (26%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |