Protein Alignment RpII140 and polr3b

DIOPT Version :9

• Sequence 1: NP_001287323.1
• Gene: RpII140 / 41721
• FlyBaseID: FBgn0262955
• Length: 1176
• Species: Drosophila melanogaster
• Sequence 2: NP_001121521.1
• Gene: polr3b / 100158643
• XenbaseID: XB-GENE-5799940
• Length: 1134
• Species: Xenopus tropicalis
• Alignment Length: 1179
• Identity: 450/1179 - (38%)
• Similarity: 677/1179 - (57%)
• Gaps: 111/1179 - (9%)

  Fly    28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQI 92
            |.::.|:...||||:|.:|||:.||...:::|::.:..:...|:           |.:.||:..|
 Frog    27 WKLLPAFLKVKGLVKQHIDSFNYFINDEIKKIMKANEKVTSDAD-----------PMWYLKYLNI 80

  Fly    93 YLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKN----VEGLDPVETQHQKTFIGKI 153
            |:..|...|......|:.|:|.|||::|||||:.|||..|:.    :....|         ||::
 Frog    81 YVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP---------IGRM 136

  Fly   154 PIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAF 218
            ||||||:.|:|:..|..:..:|||||||||||||:.|.|||::.||:::.|.:.|.:  |.|...
 Frog   137 PIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA--DRKGTV 199

  Fly   219 KTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 283
            ...:.|. .|..:..:.|   ::.:|...:|.:.           :.::|||.|:|:|:|..:|:
 Frog   200 GASVTSS-THEKKSRTNL---VVKQGRFYLKHNT-----------LTEDIPIAIIFKAMGVESDQ 249

  Fly   284 DIL------EHIIYDFDDPEMMEMVKPSLDEAFVVQ--EQNVALNFIGARGARPGV-----TKDK 335
            :|:      ||:|..|         .|||:|....|  .|..||.|||.:..|..:     .|..
 Frog   250 EIVQMIGTEEHVIAAF---------APSLEECQKAQIFTQMQALKFIGNKVRRQRMWGSSGPKKS 305

  Fly   336 RIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPL 400
            :|..|:|:|...:|.||.|.:|....|..::..||.|::||. |..::||||:||||||:|||.|
 Frog   306 KIDEARELLASTILTHVPVKEFHFRTKCIYIAVMVRRVILAQ-GANKVDDRDYYGNKRLELAGQL 369

  Fly   401 LAFLFRGLFKNLMKEVRMYTQKFI--DRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQA 463
            |:.||..|||....|::....:.|  .|...|::...::.:.||:|:..::::||| ..|:....
 Frog   370 LSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISSGNW-SLKRFKMD 433

  Fly   464 RAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLA 528
            |.||:|||:||::.:.|..:.|::|...:..|::.||.|..:.||||||::||||.|.|||||||
 Frog   434 RQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLA 498

  Fly   529 LMAYISVGSQPSPILEFLEEWSMENL-----EEIAPSAIADATKIFVNGCWVGIHRDPEQLMATL 588
            ||.:|:...:..||::......:|::     ||:   :.|:...:|:||..:|:.||.::|:.|.
 Frog   499 LMTHITTDMEDGPIIKLAANLGVEDVNLLCGEEL---SYANVFLVFLNGNILGVIRDHQKLVNTF 560

  Fly   589 RKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNY- 652
            |.:|| ...|...||:..:|.||.:.|.:|.||:|||.:||:|....:...|::.|.:    .|
 Frog   561 RLMRR-AGYINEFVSISTNISDRCVYISSDGGRLCRPYIIVKNQRSAVTNKHIQELSQ----GYR 620

  Fly   653 SWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPD 717
            |::..:...:|||:|..||....:|:..:.:.:..        ||.||.|..:|||||.:||:|.
 Frog   621 SFEDFLHESLVEYLDVNEENDCNVALYEHTITKHT--------THLEIEPFTLLGVCAGLIPYPH 677

  Fly   718 HNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIV 782
            ||||||||||.||||||||....|...|:|||.::|.||.:|:|.|:::|.:.|.:||||.|:.|
 Frog   678 HNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIEFEKLPAGQNATV 742

  Fly   783 AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAH- 846
            |::.|:||:.||:::||.::::|||.|.:.|::.| ...||..:|  .|:|    ....|.:|:
 Frog   743 AVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK-CTLKRYSNQ--TFDK----VMGPMLDANT 800

  Fly   847 ------YDKLDDDGIIAPGIRVSGDDVVIGKTI-TLPENDDELDSNTKRFSKRDASTFLRNSETG 904
                  ::.||.|||.:||.:|....|::.|.: |:.:...|..|..::...:|.....:.....
 Frog   801 RKQIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVPITYKGPTDS 865

  Fly   905 IVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIII 969
            .:::||::.|:|.....||.:|..|.|:|||||:|||||||.||:...||||.|...|:.||||:
 Frog   866 YIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCETGICPDIIM 930

  Fly   970 NPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGH 1034
            |||..|||||:|.|||.|.||.|...|.....|.|..: .|:.:...|..|||:..|.:.:.:|.
 Frog   931 NPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLIRYGYNYLGKDYVTSGI 994

  Fly  1035 TGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISH 1099
            ||..:.|.::.||.|||:|||||.||:|:|||||..:|.|||.|||:||||||.|||||||.|.:
 Frog   995 TGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGY 1059

  Fly  1100 GAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQEL 1164
            ||:..|.|||...||.:.|.:|..|||:..:..      |..||:...:|.:|:|||.|||||||
 Frog  1060 GASMLLLERLMISSDAFEVDVCGKCGLLGYSGW------CHFCKSSCHVSSLRIPYACKLLFQEL 1118

  Fly  1165 MSMNIAPRL 1173
            .||||.|||
 Frog  1119 QSMNIIPRL 1127

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII140	NP_001287323.1	PRK08565	28..1176	CDD:236291	450/1179 (38%)
polr3b	NP_001121521.1	RNA_pol_B_RPB2	39..1128	CDD:238353	446/1167 (38%)
		RNA_pol_Rpb2_4	540..601	CDD:377386	25/61 (41%)
		RNA_pol_Rpb2_5	622..662	CDD:367996	11/47 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D42570at2759
OrthoFinder	1	1.000	-	-		FOG0000346
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X610
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.010