DRSC/TRiP Functional Genomics Resources

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Protein Alignment 140up and Timmdc1

DIOPT Version :9

Sequence 1:NP_001262561.1 Gene:140up / 41720 FlyBaseID:FBgn0010340 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_001007677.1 Gene:Timmdc1 / 303922 RGDID:1359380 Length:285 Species:Rattus norvegicus


Alignment Length:251 Identity:77/251 - (30%)
Similarity:129/251 - (51%) Gaps:9/251 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLERLKQMFTIDEFGSISSELNSVYQA 73
            |...||.:     |||.....|:...:::::.....|:|.:||:|:|..||...||.|::.:.:|
  Rat    21 RVFAAGAV-----AADSQSFVEDPELRSYVSDPGSSESGWDRLRQLFVKDEQRKISKEMDYICRA 80

  Fly    74 GFLGFLIGAIYGGVTQSRVAYMNFMENNQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLF 138
            .....:||..|||:.....|...::|.:||..:.:.|||.:......|..|.:.|::|.||..:|
  Rat    81 ALSAGIIGWAYGGIPAFIYAKRRYIEQSQAEIYHNRFDAVQSAHRAATRGFIRYGWRWSWRTAVF 145

  Fly   139 TTSYFGIITCMSVYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSLLLM 203
            .|.:..:.|.::|||.|.::..:..||::||.|::::|||||:.||||||..||...|...:.|.
  Rat   146 VTIFNTVNTGLTVYRNKDALSHFAIAGAVTGGLFRINLGLRGLVAGGIIGALLGTPMGSLLMALE 210

  Fly   204 KASGTSMEEVRY----WQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEKTSEHV 255
            |..|.:::|.|.    .|.:.||:......|..:.|..:....|.|...||.::.:
  Rat   211 KHCGETVQERRQKDREAQQEQRLEEWRRNLQVTELLPMEIESGLEKIQPEKDAQRI 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
140upNP_001262561.1 Tim17 67..179 CDD:280604 33/111 (30%)
Timmdc1NP_001007677.1 Tim17 77..199 CDD:396842 42/121 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350400
Domainoid 1 1.000 93 1.000 Domainoid score I7400
eggNOG 1 0.900 - - E1_KOG4608
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9578
Inparanoid 1 1.050 127 1.000 Inparanoid score I4584
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1366254at2759
OrthoFinder 1 1.000 - - FOG0007047
OrthoInspector 1 1.000 - - oto96231
orthoMCL 1 0.900 - - OOG6_107776
Panther 1 1.100 - - LDO PTHR13002
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

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