DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment 140up and timmdc1

DIOPT Version :9

Sequence 1:	NP_001262561.1	Gene:	140up / 41720	FlyBaseID:	FBgn0010340	Length:	261	Species:	Drosophila melanogaster
Sequence 2:	NP_001120563.1	Gene:	timmdc1 / 100145717	XenbaseID:	XB-GENE-6455424	Length:	258	Species:	Xenopus tropicalis

Alignment Length:	221	Identity:	71/221 - (32%)
Similarity:	121/221 - (54%)	Gaps:	14/221 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    43 PE--ETGLERLKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMENNQATA 105
            ||  |:|.:|::::|..:|.|....|:.||.::|..|.|:|.:||||..:|.:...:::.:||..
Frog    23 PETPESGWDRIQELFQPNEQGQYPEEVGSVLKSGLTGALLGWVYGGVPAARHSKERYIQQSQAEI 87

  Fly   106 FKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMSVYRGKSSIYEYLAAGSITGS 170
            ::...:|.:...:.....|.:.|::|||||..|.|.:..:.|.:||||.:.::..|.|||::||.
Frog    88 YQHRVEAVRSAHNAALRGFIRYGWRWGWRVAAFVTIFNSVSTGLSVYRDRVALGHYAAAGAVTGG 152

  Fly   171 LYKVSLGLRGMAAGGIIGGFLGGVAGVTSLLLMKASGTSMEEVRYWQYKWRLDRDE----NIQQ- 230
            |::::|||.|:.:|.:||..||..||.....|...||.|:.:      |.|.:|.|    .:|:
Frog   153 LFRLNLGLGGLLSGSLIGAALGVPAGAMISGLQSLSGESIRD------KKRRERQELYENKLQEW 211

  Fly   231 -AFKKLTEDENPELFKAHDEKTSEHV 255
             |..::||....|:..|..|...:.|
Frog   212 SARLQVTEGVLQEMEAAQLEPVEQQV 237

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
140up	NP_001262561.1	Tim17	67..179	CDD:280604	37/111 (33%)
timmdc1	NP_001120563.1	Tim17	49..>150	CDD:280604	32/100 (32%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	92	1.000	Domainoid score	I7535
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	118	1.000	Inparanoid score	I4645
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0007047
OrthoInspector	1	1.000	-	-		oto102955
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	4.050