DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12402 and SKIP2

DIOPT Version :9

Sequence 1:NP_001303481.1 Gene:CG12402 / 41714 FlyBaseID:FBgn0038202 Length:671 Species:Drosophila melanogaster
Sequence 2:NP_569047.1 Gene:SKIP2 / 836860 AraportID:AT5G67250 Length:527 Species:Arabidopsis thaliana


Alignment Length:354 Identity:81/354 - (22%)
Similarity:131/354 - (37%) Gaps:100/354 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 LQDHAETLV---CVNLFFSCSPGIDTR---EWCRAF---------ENMHNLRTLKLSGNC----- 313
            |.|.|..::   |:||         ||   ..||..         :|..||:.|.: |:|     
plant   120 LSDEALAMISVRCLNL---------TRVKLRGCREITDLGMEDFAKNCKNLKKLSV-GSCNFGAK 174

  Fly   314 -------HLVLLEAV----LRAVPESAPIRQLDLTGMLSLTNELLL--YVAGK-------WQSTL 358
                   |..|||.:    ||.:.|:|.:..|......|....:.|  .|.|:       ...||
plant   175 GVNAMLEHCKLLEELSVKRLRGIHEAAELIHLPDDASSSSLRSICLKELVNGQVFEPLLATTRTL 239

  Fly   359 KVLDLMFC-------VQLNANCIDALRQLSGRLEALTMAYCRELTGTGLLQGLAGDINYS----- 411
            |.|.::.|       :|:.||...:|.::  .||.|.::                ||..|     
plant   240 KTLKIIRCLGDWDKVLQMIANGKSSLSEI--HLERLQVS----------------DIGLSAISKC 286

  Fly   412 --LQELHLEETIFLDESSMCQLLERLPNLRRLSLDNCR-QAVTDRTMATICQYQTRLRNLNIEYC 473
              ::.||:.:|.......:..:.||...||:|.:|..| ..:.|..:.::.           ::|
plant   287 SNVETLHIVKTPECSNFGLIYVAERCKLLRKLHIDGWRTNRIGDEGLLSVA-----------KHC 340

  Fly   474 MKITDQGLMGYGDTPYPI----SRLRGLKELNLRGCRNVTDSSL-MVGLKLPELRALSLGYCNRL 533
            :.:.:..|:|...|...:    |....|:.|.|.|...:.|:.: .:..|...||...:..| .:
plant   341 LNLQELVLIGVNATHMSLAAIASNCEKLERLALCGSGTIGDTEIACIARKCGALRKFCIKGC-PV 404

  Fly   534 TSEGFEALTQNCPSLEALCVSSCMAVDDE 562
            :..|.|||...||:|..|.|..|..|..|
plant   405 SDRGIEALAVGCPNLVKLKVKKCKVVTGE 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12402NP_001303481.1 F-box 75..117 CDD:279040
leucine-rich repeat 281..303 CDD:275381 6/33 (18%)
LRR_RI <297..482 CDD:238064 46/233 (20%)
leucine-rich repeat 304..330 CDD:275381 11/41 (27%)
leucine-rich repeat 331..357 CDD:275381 5/34 (15%)
leucine-rich repeat 358..379 CDD:275381 8/27 (30%)
leucine-rich repeat 384..409 CDD:275381 4/24 (17%)
leucine-rich repeat 412..437 CDD:275381 5/24 (21%)
AMN1 430..595 CDD:187754 34/139 (24%)
leucine-rich repeat 438..464 CDD:275381 6/26 (23%)
leucine-rich repeat 465..496 CDD:275381 5/34 (15%)
leucine-rich repeat 497..521 CDD:275381 6/24 (25%)
leucine-rich repeat 522..547 CDD:275381 8/24 (33%)
leucine-rich repeat 548..573 CDD:275381 6/15 (40%)
leucine-rich repeat 574..599 CDD:275381
SKIP2NP_569047.1 F-box-like 45..>73 CDD:403981
AMN1 82..295 CDD:187754 46/202 (23%)
leucine-rich repeat 106..128 CDD:275381 3/7 (43%)
leucine-rich repeat 135..160 CDD:275381 6/33 (18%)
leucine-rich repeat 161..185 CDD:275381 5/24 (21%)
leucine-rich repeat 239..264 CDD:275381 7/24 (29%)
leucine-rich repeat 265..288 CDD:275381 7/40 (18%)
leucine-rich repeat 289..314 CDD:275381 5/24 (21%)
AMN1 <311..>416 CDD:187754 25/116 (22%)
leucine-rich repeat 315..342 CDD:275381 7/37 (19%)
leucine-rich repeat 343..367 CDD:275381 4/23 (17%)
leucine-rich repeat 368..393 CDD:275381 6/24 (25%)
leucine-rich repeat 394..418 CDD:275381 8/24 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13318
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.