DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12402 and fbxl4

DIOPT Version :10

Sequence 1:NP_001303481.1 Gene:CG12402 / 41714 FlyBaseID:FBgn0038202 Length:671 Species:Drosophila melanogaster
Sequence 2:NP_001007316.3 Gene:fbxl4 / 492349 ZFINID:ZDB-GENE-041114-187 Length:616 Species:Danio rerio


Alignment Length:587 Identity:121/587 - (20%)
Similarity:208/587 - (35%) Gaps:169/587 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 AIARSIAAPPTP----PPTP---EKLDSDKDKEGSSKAAIELLPN-------------EMWLEIM 87
            ||.:.:|....|    |||.   |.|.|.|..:..:..|.:..||             |:...::
Zfish   148 AIVKIMACSLNPFSQNPPTDVRWEVLWSGKPNKALTPQARQFSPNIKQISFTTNLLRLEVNSSLL 212

  Fly    88 SYLSYNDLLQLRMVSWRCRDLVHRRRFMEKGKVIVTQHN-----LEAIHKHAKGGNCYLSFERIE 147
            .|.:..|.:.||.        |..|..:...|:.|...|     .|.|.:  .||.|        
Zfish   213 DYYTELDAVILRG--------VRERPILALYKIPVIDINDLSDSEEEISE--AGGLC-------- 259

  Fly   148 LRNLRQCRQ-LEN--FLRLVGHEVKHLQVRHAPVFRNLDGKLPNLKVLTIATTMSMDDQHLAAMD 209
            .|:..:.|| |.|  |.|| .:|:..|.|.|.||        |:|  ..:|.:..:..:|.    
Zfish   260 CRSTAENRQSLANGYFDRL-PYELIQLIVSHLPV--------PDL--CRLAQSCKLFHKHC---- 309

  Fly   210 DLDMKQFSHLVGFECDGVSLDAVLKMRMLLQLRRTENKVQLRHLQFEFRRNNENALLDVLQDHAE 274
                          ||.:..                  :|| .||..:.|..:.:|.. ||....
Zfish   310 --------------CDPLQY------------------IQL-SLQPYWARLTDASLCH-LQSRCT 340

  Fly   275 TLVCVNLFFSCSPGIDTREWCRAFENMHNLRTLKLSGNCHLVLLEAVLRAVPESAPIRQLDLTGM 339
            .|..:||.::.:.|..|.....:|        :|..|                            
Zfish   341 LLQRLNLSWTGNRGAVTPAGFCSF--------MKACG---------------------------- 369

  Fly   340 LSLTNELLLYVAGKWQSTLKVLDLMFCVQLNANCIDALRQLSGRLEALTMAYCRELTGTGLLQGL 404
                            ::|..|::..|..|...|::.:.|....|:.|.:|.|..|....     
Zfish   370 ----------------ASLVCLEVSCCHFLTEACLEVITQTCPCLQELNLASCDRLQPQA----- 413

  Fly   405 AGDINYSLQELHLEETIF----LDESSMCQLLERLPNLRRLSLDNCRQAVTDRTMATICQYQTR- 464
               .|:..:..||...:.    :::|::..:|...|.||.|:|.:|........:.::...:.| 
Zfish   414 ---FNHIAKLTHLRRLVLYRTKVEQSAILSILTFCPELRHLNLGSCVMIEDYDVVVSMVSARCRS 475

  Fly   465 LRNLNIEYCMKITDQGLMGYGDTPYPISRLRGLKELNLRGCRNVTDSS---LMVGLKLPELRALS 526
            ||:|::..|..::::||...      :|..|.|:||:|..|..:..||   ..:...||.||.|.
Zfish   476 LRSLDLWRCRNLSERGLAEL------VSGCRLLEELDLGWCSTLQSSSGCFQHLARSLPRLRKLF 534

  Fly   527 LGYCNRLTSEGFEALTQNCPSLEALCVSSCMAVDDETVLNIVSNLKRLRVLNLSNCTKLTLQSIH 591
            |.....:.....|.|..||.:|:.|.:.....|...::..::....||::|::|.|:::..:.:.
Zfish   535 LTANRTVCDADLEELAANCSALQHLDILGTRMVSSASLRKLLQCCPRLKLLDVSFCSQIDSRFVQ 599

  Fly   592 HI 593
            .:
Zfish   600 EL 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12402NP_001303481.1 F-box 75..117 CDD:425796 9/54 (17%)
leucine-rich repeat 281..303 CDD:275381 4/21 (19%)
PPP1R42 <297..482 CDD:455733 31/189 (16%)
leucine-rich repeat 304..330 CDD:275381 2/25 (8%)
leucine-rich repeat 331..357 CDD:275381 0/25 (0%)
leucine-rich repeat 358..379 CDD:275381 5/20 (25%)
leucine-rich repeat 384..409 CDD:275381 5/24 (21%)
leucine-rich repeat 412..437 CDD:275381 4/28 (14%)
AMN1 430..595 CDD:187754 41/168 (24%)
leucine-rich repeat 438..464 CDD:275381 5/25 (20%)
leucine-rich repeat 465..496 CDD:275381 7/30 (23%)
leucine-rich repeat 497..521 CDD:275381 8/26 (31%)
leucine-rich repeat 522..547 CDD:275381 8/24 (33%)
leucine-rich repeat 548..573 CDD:275381 3/24 (13%)
leucine-rich repeat 574..599 CDD:275381 4/20 (20%)
fbxl4NP_001007316.3 None

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