DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12402 and Amn1

DIOPT Version :9

Sequence 1:NP_001303481.1 Gene:CG12402 / 41714 FlyBaseID:FBgn0038202 Length:671 Species:Drosophila melanogaster
Sequence 2:NP_001106895.1 Gene:Amn1 / 232566 MGIID:2442933 Length:258 Species:Mus musculus


Alignment Length:227 Identity:60/227 - (26%)
Similarity:110/227 - (48%) Gaps:42/227 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 LDESSMCQLLERLPNLRRLSLDNCRQAVTDRTMATICQYQTRLRNLNIEYCMK----ITDQGLMG 483
            :.:|::.::|.  |.::||.|.:|  .::|..:..:|:.: :|:.||::.|.:    ||.:|:..
Mouse    50 ITDSNISEVLH--PEVQRLDLRSC--DISDVALQHLCKCR-KLKALNLKSCREHRNSITSEGIKA 109

  Fly   484 YGDTPYPISRLRGLKELNLRGCRNVTDSS-LMVGLKLPELRALSLGYCNRLTSEGFEALTQNCPS 547
            ..      |....|.|:.|:||.:|||.. |.:.|....|:.:.||.|..:|.....||.:|||.
Mouse   110 VA------SSCSDLHEIYLKGCCSVTDEGVLALALNCHLLKIIDLGGCLGITDVSLHALGKNCPF 168

  Fly   548 LEALCVSSCMAVDDETVLNIVSN--LKRLRVLNLSNCTKLTLQSIHH----------ILAHGHNL 600
            |:.:.:|:.. |.|..|:.:||.  .|:|..:|:..|..||.:::..          :|.||..|
Mouse   169 LQCVDISTTQ-VSDNGVVALVSGPCAKQLEEINMRYCINLTDKAVEAALTACPRICILLFHGCPL 232

  Fly   601 VQLIACSIDGMDHEQAQRILES--QRPQMKQV 630
            :.           :::|.:||.  ...::|||
Mouse   233 IT-----------DRSQEVLEQLIGSRKLKQV 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12402NP_001303481.1 F-box 75..117 CDD:279040
leucine-rich repeat 281..303 CDD:275381
LRR_RI <297..482 CDD:238064 16/62 (26%)
leucine-rich repeat 304..330 CDD:275381
leucine-rich repeat 331..357 CDD:275381
leucine-rich repeat 358..379 CDD:275381
leucine-rich repeat 384..409 CDD:275381
leucine-rich repeat 412..437 CDD:275381 2/13 (15%)
AMN1 430..595 CDD:187754 49/181 (27%)
leucine-rich repeat 438..464 CDD:275381 6/25 (24%)
leucine-rich repeat 465..496 CDD:275381 8/34 (24%)
leucine-rich repeat 497..521 CDD:275381 10/24 (42%)
leucine-rich repeat 522..547 CDD:275381 9/24 (38%)
leucine-rich repeat 548..573 CDD:275381 7/26 (27%)
leucine-rich repeat 574..599 CDD:275381 8/34 (24%)
Amn1NP_001106895.1 leucine-rich repeat 15..38 CDD:275381
AMN1 37..257 CDD:187754 60/227 (26%)
leucine-rich repeat 63..86 CDD:275381 6/25 (24%)
leucine-rich repeat 87..116 CDD:275381 8/34 (24%)
leucine-rich repeat 117..142 CDD:275381 10/24 (42%)
leucine-rich repeat 143..168 CDD:275381 9/24 (38%)
leucine-rich repeat 169..195 CDD:275381 7/26 (27%)
leucine-rich repeat 196..221 CDD:275381 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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