DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PK1-R and ghsra

DIOPT Version :9

Sequence 1:NP_001014620.1 Gene:PK1-R / 41713 FlyBaseID:FBgn0038201 Length:430 Species:Drosophila melanogaster
Sequence 2:NP_001139744.1 Gene:ghsra / 795753 ZFINID:ZDB-GENE-070912-238 Length:360 Species:Danio rerio


Alignment Length:384 Identity:116/384 - (30%)
Similarity:174/384 - (45%) Gaps:98/384 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PLAIVIPVTVVYSLIFITGVVGNISTCIVIKKNRSMHTATNYYLFSLAISDFLLLLSGVPQEVSY 80
            |:.::..|||...|.|..||.||:.|.:|:.|.:.|.|.||.||.|:|.||.|:.|. :|.::..
Zfish    33 PIPVLTGVTVTCVLFFFVGVTGNLMTILVVTKYKDMRTTTNLYLSSMAFSDLLIFLC-MPLDLYR 96

  Fly    81 IWSKYPYVFGEYICIGRGLLAETSANATVLTITAFTVERYIAICHPFLGQAMSKLSRAIRIIVLV 145
            ||...|:.||..:|.....::|....:|:|.|||.:||||.|||.|...:.:....|...:|:::
Zfish    97 IWRYRPWNFGNILCKLFQFVSECCTYSTILNITALSVERYFAICFPLRAKVVVTKGRVRGVILVL 161

  Fly   146 WIMAIVTAIPQAAQFGIEHYSG-----VEQC---------GIVRVIVKHSFQLSTFIFFLAPMSI 196
            ||::..:|.|.....|:||.:|     ..:|         |::.::|..|     .|||..|:..
Zfish   162 WIVSFFSAGPVFVLVGVEHENGTNSWDTNECKATEYAIRSGLLTIMVWVS-----SIFFFLPVFC 221

  Fly   197 ILVLYLLIGVHLY---RSTLVEGPASVARRQQLKSVPSDTILYRYGGSGTAMSFNGGGSGAGTAG 258
            :.|||.|||..|:   |.|:.|..:|                                       
Zfish   222 LTVLYSLIGRKLWKRKRETIGENASS--------------------------------------- 247

  Fly   259 LMGGSGAQLSSVRGRLNHYGTRRVLRMLVAVVVCFFLCWAPFHAQRLIAIYAPARGAKLRDQHEF 323
                        |.:.|    |:.::||..||..|.|||.|||..|.:...:...|:.       
Zfish   248 ------------RDKSN----RQTVKMLAVVVFAFVLCWLPFHVGRYLISKSTEMGSP------- 289

  Fly   324 VYTVMTY----VSGVLYYLSTCINPLLYNIMSHKFREAFKAVLFGKK--------VSKG 370
            |.:::::    :|.||:|||..|||:||||||.|:|.| ...|||.:        |:||
Zfish   290 VMSIISHYCNLISFVLFYLSAAINPILYNIMSKKYRMA-ACKLFGLRNIPRRSTSVAKG 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PK1-RNP_001014620.1 7tmA_capaR 21..358 CDD:320262 108/357 (30%)
TM helix 1 21..48 CDD:320262 11/26 (42%)
TM helix 2 55..81 CDD:320262 11/25 (44%)
TM helix 3 94..124 CDD:320262 12/29 (41%)
TM helix 4 136..158 CDD:320262 6/21 (29%)
TM helix 5 178..207 CDD:320262 12/28 (43%)
TM helix 6 277..307 CDD:320262 13/29 (45%)
TM helix 7 326..351 CDD:320262 13/28 (46%)
ghsraNP_001139744.1 7tm_4 49..333 CDD:304433 105/352 (30%)
7tm_1 54..317 CDD:278431 93/330 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D380940at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24243
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5416
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.050

Return to query results.
Submit another query.