DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdx and AT5G26280

DIOPT Version :10

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_001330230.1 Gene:AT5G26280 / 832697 AraportID:AT5G26280 Length:369 Species:Arabidopsis thaliana


Alignment Length:328 Identity:78/328 - (23%)
Similarity:112/328 - (34%) Gaps:96/328 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   388 NSSSSSNSNNQQQPQQSPLCLVLLVKCPNSKEFCNAAANFCDKRLPVNECQASQTARVTSNLHAS 452
            |.:.|.|.|||:.                |..|.:.|..|                 :||    |
plant    13 NKTISQNMNNQKW----------------SIGFISLAFLF-----------------ITS----S 40

  Fly   453 SSTMAVSRVPSPPLPEVNT--PVAENWCYTQ--------VKVVKFSYMWTINNFSFCREEMGEVL 507
            |:...:.:|......|.|:  .:.||...|:        .|:|      ||.:||..:.. ||..
plant    41 SAEFIIQQVTKGRGIEYNSSYSLEENLGVTRELREERPSSKIV------TITSFSVIKGR-GEPY 98

  Fly   508 KSSTFSAGANDKLKWCLRVNPKG-LDEESKDYLSLYLLLVSCNKS----EVRAKFKFSILNAKRE 567
            :||.|.|..   .||.|.:...| .::...|::|||..:...|..    ||....|..:.|.|..
plant    99 ESSVFEAAG---YKWRLVLYVNGNKNDGGNDHISLYARIEETNSLPLGWEVNVDLKLFVHNGKLH 160

  Fly   568 ETKAMESQRAYRFVQG-KDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVN------I 625
            :...:......|:... |:|||.:.|.|....:...|.|.:|..:...|:.:|..:..      |
plant   161 KYLTVTDGLVKRYNNAKKEWGFGQLIPRSTFYNANEGYLDQDTGSFGAEIFIVKPAQQQEKVTFI 225

  Fly   626 SGQSN------IVQFKVPECK-------LSED-LGNLFDNEKFSDVTLSVGGREF--------QA 668
            |...|      |::|...|.|       |.|| ...|..|.|...     |||..        |.
plant   226 SNPPNNVFTWKILRFSTLEDKFYYSDDFLVEDRYWRLGFNPKGDG-----GGRPHALPIFLFAQG 285

  Fly   669 HKA 671
            |||
plant   286 HKA 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 38/143 (27%)
BTB_POZ_roadkill-like 637..757 CDD:349654 15/51 (29%)
BACK_roadkill_like 752..825 CDD:350595
AT5G26280NP_001330230.1 MATH 85..212 CDD:425944 34/130 (26%)
MATH 233..358 CDD:238068 17/61 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.