DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdx and BPM1

DIOPT Version :9

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_001190334.1 Gene:BPM1 / 832018 AraportID:AT5G19000 Length:442 Species:Arabidopsis thaliana


Alignment Length:426 Identity:121/426 - (28%)
Similarity:191/426 - (44%) Gaps:86/426 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 MAVSRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTIN---NFSFCREEM------GEVLKSST 511
            |..:||.|    ||::..:::  .:|...|..|...|:|   .|..|...:      |:.:.|.|
plant     1 MGTTRVCS----EVSSGSSKS--LSQSLTVSTSTTETVNGFHEFKICGYSLAKGVGVGKYVASDT 59

  Fly   512 FSAGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCNKSEVRAKFKFSIL----NAKREE--- 568
            |..|.   ..|.:...|.|.. |::..|:||::.|.| ..::|||.|:.:::    |.|.:.   
plant    60 FMVGG---YSWAIYFYPDGKSPEDNSSYVSLFIALAS-EGADVRALFELTLVDQSGNGKHKVHSH 120

  Fly   569 -TKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIV 632
             .:|::|.......:|..||:|:|.||..|  |::..|.|:.|.:.|.|.||.   :::......
plant   121 FGRALDSGPYTLKYRGSMWGYKRFFRRSSL--ESSDYLKENSLLVRCRVGVVK---SVTEGPRYY 180

  Fly   633 QFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVA 697
            ...||...|.:.||||.::.|..||...|.|..|.|||.:||.||.||.|.....:.:|....:.
plant   181 NIPVPVSNLGQQLGNLLESGKGCDVVFQVDGETFNAHKLVLATRSPVFNAQLFGPLGDRNTKCIT 245

  Fly   698 ITDVDHEVL-----------------------------------KEMLRFIYTGKAPNLEKM--- 724
            |.|::..:.                                   |.:|.|||..:.|:::::   
plant   246 IEDMEAPIFKVLPLTLLLIVYSRMYHPGSSPGALLLFSSLLTRDKVLLHFIYWDELPDMQELIGT 310

  Fly   725 ---------ADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFI 780
                     |..||||||:||||:||.:||..||..:::.|.|.||.||:.|...||||..:.|:
plant   311 DSTLASTLVAQHLLAAADRYALERLKAICESKLCEGVAINTVATTLALAEQHHCLQLKAVCLKFV 375

  Fly   781 ----NTHATDVMETSGWQNMITTHSHLIAEAFRALA 812
                |..|  ||:|.|:..:..:...|:.|..:.:|
plant   376 ALPENLKA--VMQTDGFDYLKESCPSLLTELLQYVA 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 44/155 (28%)
BTB 645..749 CDD:279045 44/150 (29%)
BTB 656..752 CDD:197585 41/142 (29%)
SPOP_C 752..814 CDD:269807 21/65 (32%)
BPM1NP_001190334.1 MATH 34..167 CDD:238068 37/138 (27%)
BTB 193..344 CDD:279045 44/150 (29%)
BTB 204..345 CDD:197585 40/140 (29%)
SPOP_C_like_plant 347..410 CDD:269809 21/65 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 84 1.000 Domainoid score I2843
eggNOG 1 0.900 - - E1_KOG1987
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D864323at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm2651
orthoMCL 1 0.900 - - OOG6_101509
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X131
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.680

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