DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdx and AT3G56230

DIOPT Version :10

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_191182.1 Gene:AT3G56230 / 824789 AraportID:AT3G56230 Length:282 Species:Arabidopsis thaliana


Alignment Length:167 Identity:46/167 - (27%)
Similarity:87/167 - (52%) Gaps:5/167 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   649 FDNEKFSDVTLSVG--GREFQAHKAILAARSDVFAAMFEHE-MEERKLNRVAITDVDHEVLKEML 710
            |..:..:|:.|..|  |....||:|:||::|::|..:.:.: .:......:.:.:::.|.|:.:|
plant   105 FKEQLHADILLKPGDDGPPIPAHRALLASKSEIFKNILDSDGCKTAPEYAITLQELNSEQLQALL 169

  Fly   711 RFIYTG--KAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLK 773
            .|:|||  .:..|||....|..|||||.:..|:.:||:.:..:|.:.:....|.::||.|:..||
plant   170 EFLYTGTLASDKLEKNVYALFIAADKYMIHYLQELCEQYMLSSLDISSVLNVLDVSDLGSSKTLK 234

  Fly   774 AQTIDFINTHATDVMETSGWQNMITTHSHLIAEAFRA 810
            ...:.|:..:..||:.:..::.....:.||..|..||
plant   235 EACVGFVVRNMDDVVFSDKYEPFSQKNQHLCVEITRA 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743
BTB_POZ_roadkill-like 637..757 CDD:349654 32/112 (29%)
BACK_roadkill_like 752..825 CDD:350595 15/59 (25%)
AT3G56230NP_191182.1 BTB 105..213 CDD:395526 31/107 (29%)
BACK 212..268 CDD:475122 12/55 (22%)
Blue background indicates that the domain is not in the aligned region.

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