DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdx and AT3G20360

DIOPT Version :10

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_188671.1 Gene:AT3G20360 / 821580 AraportID:AT3G20360 Length:363 Species:Arabidopsis thaliana


Alignment Length:256 Identity:55/256 - (21%)
Similarity:90/256 - (35%) Gaps:79/256 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 SHHHHNSSSSSNSNNQQQPQQSPLCLVL-LVKC-----------PNSKEFCNAAANFCDKRLPVN 435
            |:|:.|:                ||:|: |:.|           ||.:       |...|..|  
plant     3 SYHYINT----------------LCIVISLLSCLFITSSFAGPVPNQE-------NGSQKIFP-- 42

  Fly   436 ECQASQTARVTSNLHASSSTMAV-SRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTINNF-SF 498
                :|.:...|.:..||:...: .|.||                        ||...:.:| :.
plant    43 ----TQISSRDSKVSLSSTVKGLRERPPS------------------------SYSLKMESFNTL 79

  Fly   499 CREEMGEVLKSSTFSAGANDKLKWCLRVNPKG-LDEESKDYLSLYLLL----VSCNKSEVRAKFK 558
            .:....|..:|..|..|   :..|.|.|.||| .::....::|||::|    ::....||....:
plant    80 MKSVYTERYESRPFRVG---RYNWTLVVYPKGNKNDNGTGHISLYVVLDNSTLTSQSEEVHVDLR 141

  Fly   559 FSILNAKREETKAMESQRAYRFVQGKD-WGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSV 618
            |.:.|.|..:...::....:||...|. |||.|.:......:..||.|.:   ...||..|
plant   142 FYVFNKKETKYFTIQDTDVWRFSAIKRMWGFSKVLPLITFNNLKNGYLYD---VDHCEFGV 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 35/143 (24%)
BTB_POZ_roadkill-like 637..757 CDD:349654
BACK_roadkill_like 752..825 CDD:350595
AT3G20360NP_188671.1 MATH 68..201 CDD:238068 35/138 (25%)
MATH 222..353 CDD:238068
Blue background indicates that the domain is not in the aligned region.

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