DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdx and spoplb

DIOPT Version :9

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_001073438.1 Gene:spoplb / 558170 ZFINID:ZDB-GENE-061103-277 Length:380 Species:Danio rerio


Alignment Length:376 Identity:285/376 - (75%)
Similarity:323/376 - (85%) Gaps:18/376 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 PVAENWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESK 536
            ||||:||||||||||||||||||||||||||||||::|||||:|.|||:||||||||||||:|||
Zfish     5 PVAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVVRSSTFSSGPNDKMKWCLRVNPKGLDDESK 69

  Fly   537 DYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEA 601
            ||||||||||||.|||||||||||:||||||||||||||||||||||||||||||||||||||||
Zfish    70 DYLSLYLLLVSCPKSEVRAKFKFSLLNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEA 134

  Fly   602 NGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREF 666
            |||||:||||:|||||||.||||||||||....|||||:||:|||||::..:|:|.:|.|||:||
Zfish   135 NGLLPDDKLTLFCEVSVVQDSVNISGQSNTNMLKVPECQLSDDLGNLWEGSRFTDCSLFVGGQEF 199

  Fly   667 QAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMADDLLAA 731
            :|||:||||||.||.|||||:|||.|.|||.|:||:.:|.:||:.|||||||||||||||:||||
Zfish   200 KAHKSILAARSPVFNAMFEHKMEESKKNRVDISDVEPDVFREMMVFIYTGKAPNLEKMADNLLAA 264

  Fly   732 ADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFIN--------------- 781
            |||||||:|||:||||||.:||||..|:.|||||||||:|||||.|||||               
Zfish   265 ADKYALERLKVLCEEALCNSLSVENVADVLILADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKN 329

  Fly   782 ---THATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRVKMS 829
               .||.|:|||:||:.||.:|.||:||||||||:.|..|.|.||||:|.|
Zfish   330 WNSNHAADIMETAGWKAMIQSHPHLVAEAFRALASAQCTPFGLPRKRLKQS 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743 127/137 (93%)
BTB 645..749 CDD:279045 74/103 (72%)
BTB 656..752 CDD:197585 71/95 (75%)
SPOP_C 752..814 CDD:269807 45/79 (57%)
spoplbNP_001073438.1 MATH 16..154 CDD:295307 127/137 (93%)
BTB 178..282 CDD:279045 74/103 (72%)
BTB 189..285 CDD:197585 71/95 (75%)
SPOP_C 285..365 CDD:269807 45/79 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 192 1.000 Domainoid score I3162
eggNOG 1 0.900 - - E1_KOG1987
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D864323at2759
OrthoFinder 1 1.000 - - FOG0000398
OrthoInspector 1 1.000 - - otm25147
orthoMCL 1 0.900 - - OOG6_101509
Panther 1 1.100 - - O PTHR24413
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X131
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.780

Return to query results.
Submit another query.