DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdx and klhl40

DIOPT Version :10

Sequence 1:NP_650326.3 Gene:rdx / 41704 FlyBaseID:FBgn0264493 Length:829 Species:Drosophila melanogaster
Sequence 2:NP_001015817.1 Gene:klhl40 / 548534 XenbaseID:XB-GENE-968841 Length:614 Species:Xenopus tropicalis


Alignment Length:178 Identity:48/178 - (26%)
Similarity:79/178 - (44%) Gaps:19/178 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   641 LSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEV 705
            |.:.|.::.|::.|.|..|.:.|:||..|:.:|||.|..|.|||...:||.|...:.:.|||.:|
 Frog    19 LQDGLKDMLDHDNFIDCVLKIQGKEFPCHRLVLAACSPYFRAMFLSNLEEGKKKEIDLEDVDPDV 83

  Fly   706 LKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSAD 770
            :.::|.:|||.:....||...|:.:.|:.:.:..:..:|...|...|.:........|..|....
 Frog    84 MGKILHYIYTSEIEITEKNVQDIFSVANMFQIPSIFTVCVSFLQKKLCLSNCLAIFRLGLLLDCP 148

  Fly   771 QLKAQTIDFINTHATDVMETSGWQNMITTHSHLIA--EAFRALATQQI 816
            :|.....||                 :....||||  |.|..|:..::
 Frog   149 RLAVSARDF-----------------VCDRFHLIARDEEFYDLSPDEL 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdxNP_650326.3 MATH_SPOP 483..621 CDD:239743
BTB_POZ_roadkill-like 637..757 CDD:349654 36/115 (31%)
BACK_roadkill_like 752..825 CDD:350595 13/67 (19%)
klhl40NP_001015817.1 BTB_POZ_KLHL40_KBTBD5 6..139 CDD:349649 36/119 (30%)
PHA03098 47..544 CDD:222983 39/150 (26%)
KELCH repeat 344..391 CDD:276965
Kelch 1 353..405
KELCH repeat 395..441 CDD:276965
Kelch 2 406..455
KELCH repeat 446..489 CDD:276965
Kelch 3 456..503
KELCH repeat 493..537 CDD:276965
Kelch 4 505..550
Kelch_1 540..587 CDD:396078
KELCH repeat 540..587 CDD:276965
Kelch 5 552..606
Blue background indicates that the domain is not in the aligned region.

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